Job Description P08555 Confidence 13.06% Date Thu Jan 5 11:01:32 GMT 2012 Rank 1 Aligned Residues 186 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		A	L	L	L	A	S	F	F	V	G	T	M	M	G	M	G	P	L	D	M	V	N	A	I	E	S	G	I	G	G	T	L	G	F	L	A	A	V	I	G	L	G	T	I	L	G	K	M	.	.	.	.	.	M	E	V	S	G	A	A	E	R	I	G	L	T	L	Q	R	C	R	W	L	S	V	D	V	I	M	V
Query Conservation																																																		.	.	.	.	.
Alig confidence																																																		.	.	.	.	.
Template Conservation
Template Sequence		S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A
Template Known Secondary structure													T	T	T																																				T						T	T		S										T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	G	L	I	C	G	I	T	L	F	V	E	V	G	V	V	L	L	I	P	L	A	F	S	I	A	K	K	T	N	T	S	L	L	K	L	A	I	P	L	C	T	A	L	M	A	V	H	C	V	V	P	P	H	P	A	A	L	Y	V	A	N	K	L	G	A	D	I	G	S	V	I	V	Y	G	L	L	V	G
Query Conservation
Alig confidence																											.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	.	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	.	.	.	.	.	.	.	.	.	.	.	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A
Template Known Secondary structure																								T	T	T	.	T		S	S																							.	.	.	.	.	.	.	.	.	.	.			G	G	G
Template Predicted Secondary structure																											.																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.												.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	A	S	L	I	G	G	P	L	F	L	K	F	L	G	Q	R	L	P	F	K	P	V	P	T	E	F	A	D	L	K	V	R	D	E	K	T	L	P	S	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R	R
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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