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Job DescriptionP0AA84
Confidence98.40%DateThu Jan 5 11:12:11 GMT 2012
Rank12Aligned Residues219
% Identity12%Templatec1q32C_
PDB info PDB header:replication,transcription,hydrolaseChain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase
Resolution2.03 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110......... 120. ........130.........140..... ....150.........160.........170.........
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Query Sequence  RTNVFRRMHRKIVVI. . . DA. RIAFIGGLNYSAEHMSSYGPEAKQ. DYAVRLEGPIVEDILQFELENLPGQSAARRWWRR
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Template Sequence  TMPPFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIGKEGLPVPFKRSLIEYLNSYHLKDIDELI
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B


TTSSS
BSSSB







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TT

T
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   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   180.........190.........200.........210.........220.........230... ......240.......
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Query Sequence  HHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPG. . . . . . . . . . . YRFLHALRKAARRG.
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Template Sequence  TKSVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYNKLEKLTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPI
Template Known Secondary structure  T
GGGTT



TTS





SBB


S
SSS


TTSS


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   254.....260.........270.........280.........290.........300.........310.........320.........330...
 
   248.250..... ....260.........270.........280.... ..... 290.
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Query Sequence  . . . . . . . . . . . . . . VRIKLIIQ. . . . . . . . . . . . . GEPDMPIVRVGARLLYNYLVKGGVQVFEY. . . . . . . . RRRPL. HG
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Template Sequence  LPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPAHS
Template Known Secondary structure 

T

BSGGGTTSTTGGGGGGG
B


GGGTS



TTTS
TTTTT

B

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   354.....360.........370.........380.........390.........400.........410.........420.........430...
 
   292... ... .300.........310... ......320...
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Query Sequence  KVAL. MDD. . . . HWATVGSSNLDPLSL. . . . . . SLNLEANVII
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Template Sequence  KFYMHCATFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY
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   434.....440.........450.........460.........470......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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