Job Description P0AA84 Confidence 96.71% Date Thu Jan 5 11:12:11 GMT 2012 Rank 16 Aligned Residues 39 % Identity 28% Template c1nopB_ PDB info PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide Resolution 2.30 Å

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		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.												.	.	.	.	320	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	R	P	L	H	G	K	V	A	L	M	D	D	H	.	.	.	.	.	.	W	A	T	V	G	S	S	N	L	D	P	L	S	L	S	L	.	.	.	.	.	.	.	.	.	.	.	N	L	E	A	N	V	I	I
Query Conservation																	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	A	M	P	H	I	K	T	Y	M	R	P	S	P	D	F	S	K	I	A	W	F	L	V	T	S	A	N	L	S	K	A	A	W	G	A	L	E	K	N	G	T	Q	L	M	I	R	S	Y	E	L	G	V	L	F
Template Known Secondary structure		T	T	S		B										T	T	S	S									S			B	S									T	T	T	T						S	B
Template Predicted Secondary structure
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions