Job Description P0ADM6 Confidence 2.29% Date Thu Jan 5 11:21:22 GMT 2012 Rank 32 Aligned Residues 50 % Identity 12% Template c3iysA_ PDB info PDB header:virus Chain: A: PDB Molecule:major capsid protein vp1; PDBTitle: homology model of avian polyomavirus asymmetric unit Resolution 11.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	V	Q	H	C	T	R	S	L	E	N	L	K	G	T	I	H	E	K	N	K	N	M	D	Y	S	K	V	M	A	F	Y	H	P	F	K	V	R	F	Y	E	Y	Y	S	P	R	G	I	P	D	G	V
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		C	K	G	D	G	L	F	L	S	A	A	D	V	A	G	T	Y	V	D	Q	R	G	R	Q	.	.	.	Y	W	R	G	L	P	R	Y	F	S	I	Q	L	R	K	R	N	V	R	N	P	Y	P	V	S	G
Template Known Secondary structure			S	S	S																G	G	G			.	.	.																					S	G	G	G		T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions