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Job DescriptionP62399
Confidence100.00%DateThu Jan 5 12:07:30 GMT 2012
Rank6Aligned Residues137
% Identity26%Templatec4a1cD_
PDB info PDB header:ribosomeChain: D: PDB Molecule:60s ribosomal protein l11; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
Resolution3.52 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80.........90.........100
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Query Sequence  NYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFF
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Template Sequence  KKENKMREVKIAKLVINCCVGESG. . . DKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDIL
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GGG




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S
BTTTTB
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   4.....10.........20....... ..30.........40.........50.........60.........70.........80
 
   101........110.........120.........130.........140.........150.........160.......
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Query Sequence  ERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGR
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Template Sequence  TRGLKVKEMELRK. . . . . . KNFSNTGNFGFGIQEHIDLG. MKYDPSTGIFGMDFYVVLERPGTRVAR
Template Known Secondary structure  TTT
G......GGB
TTS


GGGGT.



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   81........90... ......100.........110... ......120.........130.........140
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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