Job Description P62399 Confidence 100.00% Date Thu Jan 5 12:07:30 GMT 2012 Rank 4 Aligned Residues 175 % Identity 49% Template c3bboH_ PDB info PDB header:ribosome Chain: H: PDB Molecule:ribosomal protein l5; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Resolution 9.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	H	D	Y	Y	K	D	E	V	V	K	K	L	M	T	E	F	N	Y	N	S	V	M	Q	V	P	R	V	E	K	I	T	L	N	M	G	V	G	E	A	I	A	D	K	K	L	L	D	N	A	A	A	D	L	A	A	I	S	G	Q	K	P	L	I	T	K	A	R	K	S	V	A	G	F	K	I	R	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	K	T	N	Y	I	E	K	M	V	P	L	L	K	E	E	F	S	Y	S	N	I	L	E	V	P	K	V	V	K	I	V	V	N	C	G	I	G	D	A	S	Q	N	A	K	G	L	D	A	A	I	N	E	L	A	L	I	T	G	Q	R	P	V	K	T	K	A	K	T	S	I	A	G	F	K	V	R	E	G
Template Known Secondary structure								T	T	T								S	S					S	S	S	S															S	S																	T		S						B			S				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	G	C	K	V	T	L	R	G	E	R	M	W	E	F	F	E	R	L	I	T	I	A	V	P	R	I	R	D	F	R	G	L	S	A	K	S	F	D	G	R	G	N	Y	S	M	G	V	R	E	Q	I	I	F	P	E	I	D	Y	D	K	V	D	R	V	R	G	L	D	I	T	I	T	T	T	A	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	L	G	I	A	V	T	L	R	G	N	L	M	Y	S	F	L	D	R	L	I	N	L	A	L	P	R	T	R	D	F	Q	G	V	N	P	N	S	F	D	G	H	G	N	Y	S	V	G	F	R	E	Q	S	V	F	P	E	I	K	P	E	I	V	G	K	A	R	G	M	D	V	C	I	T	T	T	A	K	T
Template Known Secondary structure			B									T													S	S	T	T	T	S	S	S							S				S	S	S								S					S	S			T	T	S		S	S											S		S	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	E	G	R	A	L	L	A	A	F	D	F	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	E	A	Y	K	L	L	S	L	M	G	M	P	F
Template Known Secondary structure		G	G	G	T						T	T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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