Job Description P0AEP9 Confidence 100.00% Date Thu Jan 5 11:23:54 GMT 2012 Rank 2 Aligned Residues 467 % Identity 18% Template c1ahuB_ PDB info PDB header:flavoenzyme Chain: B: PDB Molecule:vanillyl-alcohol oxidase; PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.													.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	D	G	A	L	P	D	V	D	R	T	S	V	L	M	A	L	R	E	H	V	P	G	L	E	I	L	H	T	D	E	E	I	I	P	Y	E	C	D	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	A	Y	R	T	R	P	L	L	V	V	L	P	K	Q	M	E	Q	V	T	A	I	L	A	V	C
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	P	P	K	L	S	L	S	D	F	N	E	F	I	Q	D	I	I	R	I	V	G	S	E	N	V	E	V	I	S	S	K	D	Q	I	V	D	G	S	Y	M	K	P	T	H	T	H	D	P	H	H	V	M	D	Q	D	Y	F	L	A	S	A	I	V	A	P	R	N	V	A	D	V	Q	S	I	V	G	L	A
Template Known Secondary structure					T	T																			G	G	G						S	G	G	G						S	S	S			S	S	S		S	S		S	S		G	G	G	S			S						S	S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																			.	.																.
Query SS confidence																			.	.																.
Query Sequence		H	R	L	R	V	P	V	V	T	R	G	A	G	T	G	L	S	.	.	G	G	A	L	P	L	E	K	G	V	L	L	V	M	A	.	R	F	K	E	I	L	D	I	N	P	V	G	R	R	A	R	V	Q	P	G	V	R	N	L	A	I	S	Q	A	V	A	P	H	N	L	Y	Y	A	P	D	P	S	S	Q	I
Query Conservation																			.	.																.
Alig confidence																			.	.																.
Template Conservation
Template Sequence		N	K	F	S	F	P	L	W	P	I	S	I	G	R	N	S	G	Y	G	G	A	A	P	R	V	S	G	S	V	V	L	D	M	G	K	N	M	N	R	V	L	E	V	N	V	E	G	A	Y	C	V	V	E	P	G	V	T	Y	H	D	L	H	N	Y	L	E	A	N	N	L	R	D	K	L	W	L	D	V	P	D
Template Known Secondary structure					T							S	S	S			T	T	T	T	T	T			S	S	T	T							T	T	T									T	T	T	T						T	T		B										T	T	T	G	G	G	T							S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	C	S	I	G	G	N	V	A	E	N	A	G	G	V	H	C	L	K	Y	G	L	T	V	H	N	L	L	K	I	E	V	Q	T	L	D	G	E	A	L	T	L	G	S	D	A	L	D	S	P	G	F	D	L	L	A	L	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.
Template Sequence		L	G	G	G	S	V	L	G	N	A	V	E	R	G	V	G	Y	T	P	Y	G	D	H	W	M	M	H	S	G	M	E	V	V	L	A	N	G	E	L	L	R	T	G	M	G	A	L	P	.	.	.	.	D	P	K	R	P	E	T	M	G	L	K	P	E	D	Q	P	W	S	K	I	A	H	L	F	P	Y	G	F
Template Known Secondary structure			S	S	S	B								T		B		S	S	T	T		B	T	G	G	G									T	T	S						G	G	G	G	S		.	.	.	.					T	T	T	T	T			T	T	T					S	G	G	G	T		S			S
Template Predicted Secondary structure																																																		.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
									212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure		.	.	.	.	.	.	.																																	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																	.	.	.
Query Sequence		.	.	.	.	.	.	.	G	S	E	G	M	L	G	V	T	T	E	V	T	V	K	L	L	P	K	P	P	V	A	R	V	L	L	A	S	F	D	S	.	.	.	V	E	K	A	G	L	A	V	G	D	I	I	A	N	G	I	I	P	G	G	L	E	M	M	D	N	L	S	I	R	A	A	E	D	F	I	H	A
Query Conservation		.	.	.	.	.	.	.																																	.	.	.
Alig confidence		.	.	.	.	.	.	.																																	.	.	.
Template Conservation
Template Sequence		G	P	Y	I	D	G	L	F	S	Q	S	N	M	G	I	V	T	K	I	G	I	W	L	M	P	N	P	R	G	Y	Q	S	Y	L	I	T	L	P	K	D	G	D	L	K	Q	A	V	D	I	I	R	P	L	R	L	G	M	A	L	Q	N	V	P	T	I	R	H	I	L	L	D	A	A	V	L	G	D	K	R	S
Template Known Secondary structure		S				G	G	G	G	S	S	S	S	S															S											S	T	T																T		S		S															S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		282	.	.	.	.																		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Query Sequence		G	Y	P	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	I	L	L	C	E	L	D	G	V	E	S	D	V	Q	E	D	C	E	R	V	N	D	I	L	L	K	A	G	A	T	D	V	R	L	A	Q	D	E	A	E	R	V	R	F	W	A	G	R	K	N	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.
Template Conservation
Template Sequence		Y	S	S	R	T	E	P	L	S	D	E	E	L	D	K	I	A	K	Q	L	N	L	G	R	W	N	F	Y	G	A	L	Y	G	P	E	P	I	R	R	V	L	W	E	T	I	K	D	A	F	S	A	I	P	G	V	K	F	Y	F	P	E	D	T	P	E	N	S	V	L	R	V	R	D	K	T	M	Q	G	I	P
Template Known Secondary structure		T				S	S															T			S									S																G	G	G	S	T	T						G	G	G	S		S	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure		.	.	.	.	.	.																																																								.	.
Query SS confidence		.	.	.	.	.	.																																																								.	.
Query Sequence		.	.	.	.	.	.	A	F	P	A	V	G	R	I	S	P	D	Y	Y	C	M	D	G	T	I	P	R	R	A	L	P	G	V	L	E	G	I	A	R	L	S	Q	Q	Y	D	L	R	V	A	N	V	F	H	A	G	D	G	N	M	H	P	.	.	L	I	L	F	D	A	N	E	P	G	E	F	A	R	A	E	E
Query Conservation		.	.	.	.	.	.																																																								.	.
Alig confidence		.	.	.	.	.	.																																																								.	.
Template Conservation
Template Sequence		T	Y	D	E	L	K	W	I	D	W	L	P	N	G	A	H	L	F	F	S	P	I	A	K	V	S	G	E	D	A	M	M	Q	Y	A	V	T	K	K	R	C	Q	E	A	G	L	D	F	I	G	T	F	T	V	G	M	R	E	M	H	H	I	V	C	I	V	F	N	K	K	D	L	I	Q	K	R	K	V	Q	W
Template Known Secondary structure				G	G	G	G	G	G	G	S	S	S	S								B				S																			T	T											S	S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		L	G	G	K	I	L	E	L	C	V	E	V	G	G	S	I	S	G	E	H	G	I	G	R	E	K	I	N	Q	M	C	A	Q	F	N	S	D	E	I	T	T	F	H	A	V	K	A	A	F	D	P	D	G	L	L	N	P	G	K	.	.	N	I	P	T	L	H	R	C
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		L	M	R	T	L	I	D	D	C	A	A	N	G	W	G	E	Y	R	T	H	L	A	F	M	D	Q	I	M	E	T	Y	N	W	N	N	S	S	F	L	R	F	N	E	V	L	K	N	A	V	D	P	N	G	I	I	A	P	G	K	S	G	V	W	P	S	Q	Y	S	H
Template Known Secondary structure													T	T			B	S				G	G	G																												T	T			B		T	T	G	G	G				T	T	S
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.