Job Description P0AAD6 Confidence 100.00% Date Thu Jan 5 11:12:37 GMT 2012 Rank 2 Aligned Residues 372 % Identity 13% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	R	K	T	D	T	M	W	M	L	G	L	Y	G	T	A	I	G	A	G	V	L	F	L	P	I	N	A	G	V	G	G	M	I	P	L	I	I	M	A	I	L	A	F	P	M	T	F	F	A	H	R	G	L	T	R	F	V	L	S	G	K	N	P	G	E	D	I	T	E	V	V	E	E	H	F	G	I	G
Query Conservation
Alig confidence																																				.																																				.
Template Conservation																																				.																																				.
Template Sequence		A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	.	I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	.	Y	A	R	R	C	F	G	P	F
Template Known Secondary structure			S	S													T	T	S	S	S	S	T	T	T					T	T	S	S			.			S																						T	T				S	S		T	T	T	.	G	G	G	G	T	T
Template Predicted Secondary structure																																				.																																				.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	K	L	I	T	L	L	Y	F	F	A	I	Y	P	I	L	L	V	Y	S	V	A	I	T	N	T	V	E	S	F	M	S	H	Q	L	G	M	T	P	P	P	R	A	I	L	S	L	I	L	I	V	G	M	M	T	I	V	R	F	G	E	Q	M	I	V	K	A	M	S	I	L	V	F	P	F	V	G	V	L
Query Conservation
Alig confidence																																			.	.
Template Conservation																																			.	.
Template Sequence		L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	.	.	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I
Template Known Secondary structure												T	T	T	T											T	G	G	G	S	S	S	S		.	.				S	S	S																			S		S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	L	A	L	Y	L	I	P	Q	W	N	G	A	A	L	E	T	L	S	L	D	T	A	S	A	T	G	N	G	L	W	M	T	L	W	L	A	I	P	V	M	V	F	S	F	N	H	S	P	I	I	S	S	F	A	V	A	K	R	E	E	Y	G	D	M	A	E	Q	K	C	S	K	I	L	A	F	A	H	I
Query Conservation
Alig confidence																													.	.	.	.																																	.	.	.	.	.
Template Conservation																													.	.	.	.																																	.	.	.	.	.
Template Sequence		V	G	I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	A	W	N	V	S	G	L	G	T	.	.	.	.	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	.	.	.	.	.	R	N	V	P	I	A	T	I	G	G	V	L
Template Known Secondary structure											S			S	S							S		S	S	S			.	.	.	.				T								S	T	T		T	T	G	G	G					G	G	G	S	S	S			.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.																																	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	M	V	L	T	V	M	F	F	V	F	S	C	V	L	S	L	T	P	A	D	L	A	A	A	K	E	Q	N	I	S	I	L	S	Y	L	A	N	H	F	N	A	P	V	I	A	W	M	A	P	I	I	A	I	I	A	I	T	K	S	F	L	G	H	Y	L	G	A	R	E	G	F	N	G	M	V	I	K	S	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	M	I	P	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L
Template Known Secondary structure											T	T				S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T																T	T	S	S	T	T	T	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.						.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																									.	.	.	.	.
Query SS confidence																																									.	.	.	.	.
Query Sequence		R	G	K	G	K	S	I	E	I	N	K	L	N	R	I	T	A	L	F	M	L	V	T	T	W	I	V	A	T	L	N	P	S	I	L	G	M	I	E	.	.	.	.	.	T	L	G	G	P	I	I	A	M	I	L	F	L	M	P	M	Y	A	I	Q	K	V	P	A	M	R	K	Y	S	G	H	I	S	N	V	F
Query Conservation																																									.	.	.	.	.
Alig confidence																																									.	.	.	.	.
Template Conservation
Template Sequence		F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L	A
Template Known Secondary structure		S									S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	M	G	L	I	A	I	S	A	I	F	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	T	I	A	F	L	Y	C	I	W	A	V	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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