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Job DescriptionP0AAD6
Confidence97.23%DateThu Jan 5 11:12:37 GMT 2012
Rank8Aligned Residues396
% Identity8%Templatec3hfxA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   4.....10.........20.........30.........40.... .....50.........60........
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Query Sequence  TQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN. . . . . . . . . . . . . . . AGVGGMIPLIIMAILAFPMTFFAH
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Template Sequence  GPYAKKRLGNEPPEF. . STASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWAT
Template Known Secondary structure  SSSTTS
SSSS

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T



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   72.......80...... ...90.........100.........110.........120.........130.........140.........
 
   6970... ......80.........90...... ...100.........110.........120.........130........
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Query Sequence  RGLTR. . . . . FVLSGKNPGEDITEVVEEHFGIG. . . . . AGKLITLLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPP
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Template Sequence  YSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTL
Template Known Secondary structure  TS




SSGGGG
TTT
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T
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   150.........160.........170.........180.........190.........200.........210.........220.........
 
   139140.........150........ .160.........170.........180.. .......190.........200.........
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Query Sequence  RAILSLILIVGMMTIVRFGE. . . QMIVKAMSILVFPFVGVLMLLALY. . . . . . LIPQWNGAALETLSLDTASATGNGLWM
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Template Sequence  QLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAK
Template Known Secondary structure  SS


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   230.........240.........250.........260.........270.........280.........290.........300.........
 
   210.........220.........230.........240......... 250.........260.........270.........280.......
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Query Sequence  TLWLAIPVMVFSFNHSPIISSFAVAKREEYGDMAEQKCSK. . ILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNIS
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Template Sequence  GGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYG
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   288.290.........300.........310.........320.........330.........340.........350.........360.......
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Query Sequence  ILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLN
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Template Sequence  VARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGL
Template Known Secondary structure  TSSSTTTTS
SSSSS
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   390.........400.........410.........420.........430.........440.........450.........460.........
 
   368.370.........380.........390.........400.
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Query Sequence  PSILGMIETLGGPIIAMILFLMPMYAIQKVPAMR
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Template Sequence  KPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWK
Template Known Secondary structure  T

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   470.........480.........490.........500...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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