Job Description P0AAD6 Confidence 99.33% Date Thu Jan 5 11:12:37 GMT 2012 Rank 4 Aligned Residues 411 % Identity 11% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		E	T	T	Q	T	S	T	I	A	S	K	D	S	R	S	A	W	R	K	T	D	T	M	W	M	L	G	L	Y	G	T	A	I	G	A	G	.	V	L	F	L	P	I	N	A	G	V	G	G	M	I	P	L	I	I	M	A	I	L	A	F	P	M	T	F	F	A	H	R	G	L	T	R	F	V	L	S	G	K	N
Query Conservation																																						.
Alig confidence																																						.														.
Template Conservation																																																				.
Template Sequence		X	X	X	X	X	X	X	X	X	X	X	X	X	X	A	G	K	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	.	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	K	G	I
Template Known Secondary structure																		S																	S					T									T		G	.	G	G																		T							T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		P	G	E	D	I	T	E	V	V	E	E	H	F	G	I	G	A	G	K	L	I	T	L	L	Y	F	F	.	A	I	Y	P	I	L	L	V	Y	S	V	A	I	T	N	T	V	E	S	F	M	S	H	Q	L	G	M	T	P	P	P	R	A	I	L	S	L	I	L	I	V	G	M	M	T	I	V	R	F	G	E	Q
Query Conservation																													.
Alig confidence			.	.																									.																							.	.	.	.	.	.	.
Template Conservation			.	.																																																.	.	.	.	.	.	.
Template Sequence		Y	.	.	T	I	P	E	F	V	E	K	R	F	N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	.	.	.	.	.	.	.	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T
Template Known Secondary structure			.	.	S									T																			T																	T	T	.	.	.	.	.	.	.																	T	T				S
Template Predicted Secondary structure			.	.																																																.	.	.	.	.	.	.
Template SS confidence
		112			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.											.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	V	K	A	M	S	I	L	V	F	P	F	V	G	V	L	M	L	L	A	L	Y	.	.	.	.	.	.	.	.	.	.	L	I	P	Q	W	N	G	A	A	L	E	T	L	S	L	D	T	A	S	A	T	G	N	G	L	W	M	T	L	W	L	A	I	P	V	M	V	F	S	F	N	H	S	P	I	I	S
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q
Template Known Secondary structure																										T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280												.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	A	V	A	K	R	E	E	Y	G	D	M	A	E	Q	K	C	S	K	I	L	A	F	A	H	I	M	M	V	L	T	V	M	F	F	V	F	S	C	V	L	S	L	T	P	A	D	L	A	A	.	.	.	.	.	.	.	.	.	.	.	A	K	E	Q	N	I	S	I	L	S	Y	L	A	N	H	F	N	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V
Template Known Secondary structure									S	S	S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	I	A	W	M	A	P	I	I	A	I	I	A	I	T	K	S	F	L	G	H	Y	L	G	A	R	E	G	F	N	G	M	V	I	K	S	L	R	G	K	G	K	S	I	E	I	N	K	L	N	R	I	T	A	L	F	M	L	V	T	T	W	I	V	A	T	L	N	P	S	I	L	G	M	I	E	T	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q
Template Known Secondary structure		T																																T							S		S		S	S																					G	G	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	I	I	A	M	I	L	F	L	M	P	M	Y	A	I	Q	K	V	P	A	M	R	K	Y	S	G	H	I	S	N	V	F	V	V	V	M	G	L	I	A	I	S	A	I	F	Y
Query Conservation
Alig confidence															.										.	.
Template Conservation															.										.	.
Template Sequence		E	Y	T	G	L	V	S	P	G	I	L	A	V	.	F	L	L	G	L	F	W	K	K	.	.	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F
Template Known Secondary structure					T	T	T								.								T	T	.	.																						T
Template Predicted Secondary structure															.										.	.
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450			.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.