Job Description P0AAD6 Confidence 98.34% Date Thu Jan 5 11:12:37 GMT 2012 Rank 7 Aligned Residues 389 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.													.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	A	S	K	D	S	R	S	A	W	R	K	T	D	T	M	W	M	L	G	L	Y	G	T	A	I	G	A	G	V	L	F	L	.	.	.	.	.	.	.	.	.	.	.	.	P	I	N	A	G	V	G	G	M	I	P	L	I	I	M	A	I	L	A	F	P	M	T	F	F	A	H	R	G	L	T	R	F	V
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		R	L	G	R	I	D	E	A	P	E	F	.	.	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A
Template Known Secondary structure			S	S	S	T	T				S	S	.	.																																T			T	T	S		S	S														S
Template Predicted Secondary structure													.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
						76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																						.	.	.	.	.
Query SS confidence		.	.	.	.																						.	.	.	.	.
Query Sequence		.	.	.	.	L	S	G	K	N	P	G	E	D	I	T	E	V	V	E	E	H	F	G	I	G	.	.	.	.	.	A	G	K	L	I	T	L	L	Y	F	F	A	I	Y	P	I	L	L	V	Y	S	V	A	I	T	N	T	V	E	S	F	M	S	H	Q	L	G	M	T	P	P	P	R	A	I	L	S	L	I	L
Query Conservation		.	.	.	.																						.	.	.	.	.
Alig confidence		.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V
Template Known Secondary structure						T	T	T	S				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		147	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		I	V	G	M	M	T	I	V	R	F	.	.	.	.	.	G	E	Q	M	I	V	K	A	M	S	I	L	V	F	P	F	V	G	V	L	M	L	.	.	.	.	.	.	.	L	A	L	Y	L	I	P	Q	W	N	G	A	A	L	E	T	L	S	L	D	T	A	S	A	T	G	N	G	L	W	M	T	L	W	L	A
Query Conservation												.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S
Template Known Secondary structure						T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S								T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	V	M	V	F	S	F	N	H	S	P	I	I	S	S	F	A	V	A	K	R	E	E	Y	G	D	M	A	E	Q	K	C	S	K	I	L	A	F	A	H	I	M	M	V	L	T	V	M	F	F	V	F	S	C	V	L	S	L	T	P	A	D	L	A	A	A	K	E	Q	N	I	S	I	L	S	Y	L	A	N
Query Conservation
Alig confidence										.																									.	.
Template Conservation										.																									.	.
Template Sequence		W	T	I	F	Y	W	A	W	.	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	.	.	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G
Template Known Secondary structure		T								.			T	T												T	T	T							.	.																														T						T	T		S
Template Predicted Secondary structure										.																									.	.
Template SS confidence
		366	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370
Predicted Secondary structure																																																																												.	.	.	.
Query SS confidence																																																																												.	.	.	.
Query Sequence		H	F	N	A	P	V	I	A	W	M	A	P	I	I	A	I	I	A	I	T	K	S	F	L	G	H	Y	L	G	A	R	E	G	F	N	G	M	V	I	K	S	L	R	G	K	G	K	S	I	E	I	N	K	L	N	R	I	T	A	L	F	M	L	V	T	T	W	I	V	A	T	L	N	P	.	.	.	.	S	I
Query Conservation																																																																												.	.	.	.
Alig confidence																																											.	.	.	.	.																													.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N
Template Known Secondary structure					T	S	T	T																															T	T	T	T	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.						.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	M	I	E	T	L	G	G	P	I	I	A	M	I	L	F	L	M	P	M	Y	A	I	Q	K	V	P	A	M	R	K	Y	S	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y
Template Known Secondary structure																														T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.