Job Description Q00042 Confidence 96.74% Date Thu Jan 5 12:33:20 GMT 2012 Rank 6 Aligned Residues 302 % Identity 15% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	D	D	R	T	I	V	V	G	R	R	G	T	G	K	S	A	L	F	I	Q	L	N	E	H	W	K	K	D	K	K	I	L	I	L	S	F	S	P	D	D	S	Q	I	I	G	F	R	S	M	L	K	P	F	T	G	S	F	N	L	A	R	A	A	T	R	L	L	W	R	Y	A	M	L	M	E	I	A	S
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	.	.	.	.	.	.	.	.	.	.	.	R	H	R	E	T	P	Y	R	V	A	S	A	I	A	E	A	V	.	.	.	.	.	.	.
Template Known Secondary structure											B		T	T	S	S																				T										T	.	.	.	.	.	.	.	.	.	.	.	T	T	S		S													.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.												.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	S	S	H	Y	K	L	S	S	Q	I	S	S	E	T	L	L	N	E	H	L	K	K	W	N	S	A	Q	G	D	I	L	R	K	C	R	L	V	A	K	E	Y	L	D	E	N	N	P	E	E	S	I	G	D	L	Q	F	N	L	N	I	S	E	I	E	N	N	I	V	S	L	L	E	R	S	D	R	K	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S					S	S																T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																					116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	M	D	K	L	D	E	A	Y	E	P	D	N	I	G	I	G	I	I	A	G	L	A	Y	A	S	I	E	L	N	Q	K	A	K	C	I	R	P	I	I	F	L	R	D	N	I	F	R	S	L	S	K	E	D	P	D	Y	S	R	N	I	E	G	Q	V	I	R	L	H	W	D	W	A	Q	L	L	M	L
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	.	.	.	.	.	.	.	.	D	L	L	Y	R	I	T	R	I	N	Q	E	L	V	S	L	V	G	I	T	N	S	L	G	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	P	Q	L	R	D	I
Template Known Secondary structure							T	T	T					S	T	T			.	.	.	.	.	.	.	.									G	G	G										S		S	T	T	S	S	S	S						T	T	T	T	S					B
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.									.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	K	R	M	K	V	A	F	K	L	D	I	E	K	D	Q	R	V	W	D	R	C	T	A	D	D	L	K	G	R	N	G	F	K	R	C	L	Q	F	T	L	Y	R	P	R	D	L	L	S	L	L	N	E	A	F	F	S	A	F	R	E	N	R	E	T	I	I	N	T	D	L	E	Y	A	A	K	S	I	S
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	T	R	A	E	E	A	F	N	P	G	V	L	D	P	D	V	V	P	L	C	.	.	.	.	.	.	.	.	.	.	.	.	A	A	L	A	A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	E	E	R	V	R	R	E	H	V	Y	S	A	R	A	E	I	E
Template Known Secondary structure										B		T	T	T	B		S	S						.	.	.	.	.	.	.	.	.	.	.	.						S	S	S																				T	T		S		B
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.													.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	R	L	E	D	L	W	K	E	Y	Q	K	I	F	P	S	I	Q	V	I	T	S	A	F	R	S	I	E	P	E	L	T	V	Y	T	C	L	K	K	I	E	A	S	F	E	L	I	E	E	N	G	D	P	K	I	T	S	E	I	Q	L	L	K	A	S	G	I	L	Q	S	L	Y	S	V	G	F	V
Query Conservation
Alig confidence																																				.	.	.	.																											.	.	.
Template Conservation																																				.	.	.	.																											.	.	.
Template Sequence		R	D	R	V	S	E	V	V	R	T	L	P	L	H	A	K	L	V	L	L	S	I	M	M	L	E	D	G	G	R	P	A	S	T	.	.	.	.	G	E	I	Y	E	R	Y	K	E	L	T	S	T	L	G	L	E	H	V	T	L	R	R	V	S	G	.	.	.	I	I	S	E	L	D	M	L	G	I	V
Template Known Secondary structure											S	S															S	S	S	S						.	.	.	.														T	T												.	.	.								T	T	S
Template Predicted Secondary structure																																				.	.	.	.																											.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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