Job Description Q00042 Confidence 96.94% Date Thu Jan 5 12:33:20 GMT 2012 Rank 5 Aligned Residues 302 % Identity 20% Template c2qbyA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:cell division control protein 6 homolog 1; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		E	T	D	D	R	T	I	V	V	G	R	R	G	T	G	K	S	A	L	F	I	Q	L	.	.	.	.	N	E	H	W	K	K	D	K	K	I	L	I	L	S	F	S	P	D	D	S	Q	I	I	G	F	R	S	M	L	K	P	F	T	G	S	F	N	L	A	R	A	A	T	R	L	L	W	R	Y	A	M	L	M
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	P	N	N	I	F	I	Y	G	L	T	G	T	G	K	T	A	V	V	K	F	V	L	S	K	L	H	K	K	F	L	G	K	F	K	H	V	Y	I	N	T	R	Q	I	D	T	P	Y	R	V	L	A	D	L	L	E	S	L	D	V	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T	S	S																T		S	S													S									T	T	T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	A	S	Y	I	S	S	H	Y	K	L	S	S	Q	I	S	S	E	T	L	L	N	E	H	L	K	K	W	N	S	A	Q	G	D	I	L	R	K	C	R	L	V	A	K	E	Y	L	D	E	N	N	P	E	E	S	I	G	D	L	Q	F	N	L	N	I	S	E	I	E	N	N	I	V	S	L	L	E	R	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	T	G	L	S	I	A	E	L	Y	R	R	L	V	K	A	V	R	D	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S																T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																													117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	K	V	V	I	L	M	D	K	L	D	E	A	Y	E	P	D	N	I	G	I	G	I	I	A	G	L	A	Y	A	S	I	E	L	N	Q	K	A	K	C	I	R	P	I	I	F	L	R	D	N	I	F	R	S	L	S	K	E	D	P	D	Y	S	R	N	I	E	G	Q	V	I	R	L	H	W	D	W	A	Q
Query Conservation
Alig confidence																					.	.	.	.	.	.																																				.
Template Conservation																					.	.	.	.	.	.																																				.
Template Sequence		G	S	Q	V	V	I	V	L	D	E	I	D	A	F	V	K	K	Y	N	.	.	.	.	.	.	D	D	I	L	Y	K	L	S	R	I	N	S	E	V	N	K	I	S	F	I	G	I	T	N	D	V	K	F	V	D	L	L	D	P	R	.	V	K	S	S	L	S	E	E	E	I	I	F	P	P	Y	N	A	E	E
Template Known Secondary structure			S								T							S	S		.	.	.	.	.	.	S	T											S											S		G	G	G	G	G	G		T	T		.				T	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.																																				.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	M	L	S	A	K	R	M	K	V	A	F	K	L	D	I	E	K	D	Q	R	V	W	D	R	C	T	A	D	D	L	K	G	R	N	G	F	K	R	C	L	Q	F	T	L	Y	R	P	R	D	L	L	S	L	L	N	E	A	F	F	S	A	F	R	E	N	R	E	T	I	I	N	T	D	L	E	Y	A	A
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	D	I	L	T	K	R	A	Q	M	A	F	K	P	G	V	L	P	D	N	V	I	.	.	.	.	.	.	.	.	.	.	.	.	K	L	C	A	A	L	A	A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	S	G	E	I	A	E	R	M	K	D	T	K	V	K	E	E	Y	V	Y	M	A	K
Template Known Secondary structure														B		S	S		S						.	.	.	.	.	.	.	.	.	.	.	.										T	T																				T	T		S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.													.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	I	S	M	A	R	L	E	D	L	W	K	E	Y	Q	K	I	F	P	S	I	Q	V	I	T	S	A	F	R	S	I	E	P	E	L	T	V	Y	T	C	L	K	K	I	E	A	S	F	E	L	I	E	E	N	G	D	P	K	I	T	S	E	I	Q	L	L	K	A	S	G	I	L	Q	S	L	Y	S	V	G
Query Conservation
Alig confidence																	.	.	.																.	.	.	.	.																																.	.	.
Template Conservation																	.	.	.																.	.	.	.	.																																.	.	.
Template Sequence		E	E	I	E	R	D	R	V	R	D	I	I	L	T	L	.	.	.	P	F	H	S	K	L	V	L	M	A	V	V	S	I	S	.	.	.	.	.	V	S	T	T	G	A	V	Y	E	T	Y	L	N	I	C	K	K	L	G	V	E	A	V	T	Q	R	R	V	S	D	I	.	.	.	I	N	E	L	D	M	V	G
Template Known Secondary structure															T	S	.	.	.																.	.	.	.	.																			T													.	.	.								T
Template Predicted Secondary structure																	.	.	.																.	.	.	.	.																																.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310						.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.				.	.	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	G	I	R	D	K	N	T	S	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	A	K	V	V	N	R	G	R	Y
Template Known Secondary structure		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions