Job Description Q00042 Confidence 94.92% Date Thu Jan 5 12:33:20 GMT 2012 Rank 13 Aligned Residues 311 % Identity 18% Template c2fnaA_ PDB info PDB header:atp-binding protein Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of an archaeal aaa+ atpase (sso1545) from sulfolobus2 solfataricus p2 at 2.00 a resolution Resolution 2.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	R	T	I	V	V	G	R	R	G	T	G	K	S	A	L	F	I	Q	L	N	E	H	W	K	K	D	K	K	I	L	I	L	S	F	S	P	D	D	S	Q	I	I	G	F	R	S	M	L	K	P	F	T	G	S	F	N	L	A	R	A	A	T	R	L	L	W	R	Y	A	M	L	M	E	I	A	S	Y	I
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		A	P	I	T	L	V	L	G	L	R	R	T	G	K	S	S	I	I	K	I	G	I	N	E	L	N	L	P	Y	I	Y	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	K	F	E	E	R	N	Y	I	S	Y	K	D	F	L	L	.	E	L	Q	K	E	I	N	K	L	V
Template Known Secondary structure		S	S							S	T	T	S	S													T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	T	T		S										.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	H	Y	K	L	S	S	Q	I	S	S	E	T	L	L	N	E	H	L	K	K	W	N	S	A	Q	G	D	I	L	R	K	C	R	L	V	A	K	E	Y	L	D	E	N	N	P	E	E	S	I	G	D	L	Q	F	N	L	N	I	S	E	I	E	N	N	I	V	S	L	L	E	R	S	D	R	K	V	V	I
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	L	P	S	L	L	K	A	L	K	N	I	Q	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	X	G	N	E	I	K	F	N	R	L	S	F	A	N	L	L	E	S	F	E	Q	A	S	K	D	N	V	I	I
Template Known Secondary structure					T	T					T	T	T	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S																		T		S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																																		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		L	M	D	K	L	D	E	A	Y	E	P	D	N	I	G	I	G	I	I	A	G	L	A	Y	A	S	I	E	L	N	Q	K	A	K	C	I	R	P	I	I	F	L	R	D	N	I	F	R	S	L	S	K	E	D	P	D	Y	S	R	N	I	E	G	Q	V	I	R	L	H	W	.	.	.	.	D	W	A	Q	L	L
Query Conservation																																																																								.	.	.	.
Alig confidence																	.	.	.	.	.	.																																																		.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		V	L	D	E	A	Q	E	L	V	K	L	R	G	V	N	.	.	.	.	.	.	L	L	P	A	L	A	Y	A	Y	D	N	L	K	R	I	K	F	I	X	S	G	S	E	X	G	L	L	Y	D	Y	L	R	V	E	D	P	E	S	P	L	F	G	R	A	F	S	T	V	E	L	K	P	F	S	R	E	E	A	I
Template Known Secondary structure					T	G	G	G	G	G	G		T	T			.	.	.	.	.	.													T	T								S	S								T	T	T	T		T	T	S	T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	S	A	K	R	M	K	V	A	F	K	L	D	I	E	K	D	Q	R	V	W	D	R	C	T	A	D	D	L	K	G	R	N	G	F	K	R	C	L	Q	F	T	L	Y	R	P	R	D	L	L	S	L	L	N	E	A	F	F	S	A	F	R	E	N	R	E	T	I	I	N	T	D	L	E	Y	A	A	K	S
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	L	R	R	G	F	Q	E	A	D	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	D	Y	E	V	V	Y	E	K	I	G	G	I	P	G	W	L	T	Y	F	G	F	I	Y	L	D	N	K	.	.	.	.	.	.	.	.	.	.	.	N	L	D	F	A	I	N	Q
Template Known Secondary structure												T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S																	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.																				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.												.	.	.	260	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	M	A	R	L	E	D	L	W	K	E	Y	Q	K	I	F	P	S	I	Q	V	I	T	S	A	F	R	S	I	E	P	E	L	T	V	Y	T	C	L	K	K	I	E	A	S	F	E	L	I	E	E	N	G	D	P	K	I	T	S	E	I	Q	L	L	K	A	S	G	I	L	Q	S	L	Y	S	V	G	F	V
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.
Template Sequence		T	L	E	Y	A	K	K	L	I	L	K	E	F	E	N	F	L	H	G	R	E	I	A	R	K	R	Y	L	N	I	X	R	T	L	S	K	C	G	K	W	S	D	V	K	R	A	L	E	L	E	.	.	.	.	.	.	.	E	G	I	E	I	S	D	S	E	I	Y	N	Y	L	T	Q	L	T	K	H	S	W	I
Template Known Secondary structure																			T	T		G	G	G												T	T		B													.	.	.	.	.	.	.			S																	T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.								.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	R	D	K	N	T	S	S	Y	S	F	C	H
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	I	K	E	G	E	K	Y	C	P	S	E
Template Known Secondary structure		.	.	.			S	S	S					S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					338	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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