Job Description Q00042 Confidence 94.92% Date Thu Jan 5 12:33:20 GMT 2012 Rank 14 Aligned Residues 223 % Identity 24% Template c1iy2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent metalloprotease ftsh; PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus Resolution 3.20 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		F	G	D	T	T	A	E	N	D	K	K	M	L	S	N	A	F	I	E	T	A	D	F	R	T	L	.	I	E	T	D	D	R	T	I	V	V	G	R	R	G	T	G	K	S	A	L	F	I	Q	L	N	E	H	W	K	K	D	K	K	I	L	I	L	S	F	S	P	D	D	S	Q	I	I	G	F	R	S	M	L
Query Conservation																												.
Alig confidence																												.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	A	R	V	P	F	I	T	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S																								T	T													T	T	S	S												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	F	T	G	S	F	N	L	A	R	A	A	T	R	L	L	W	R	Y	A	M	L	M	E	I	A	S	Y	I	S	S	H	Y	K	L	S	S	Q	I	S	S	E	T	L	L	N	E	H	L	K	K	W	N	S	A	Q	G	D	I	L	R	K	C	R	L	V	A	K	E	Y	L	D	E	N	N	P	E	E	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																															222	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	D	L	Q	F	N	L	N	I	S	E	I	E	N	N	I	V	S	L	L	E	R	S	D	R	K	V	V	I	L	M	D	K	L	D	E	A	Y	E	P	D	N	I	G	I	G	I	I	A	G	L	A	Y	A	S	I	E	L	N	Q	K	A	K	C	I	R	P	I	I	F	L	R	D	N	I	F	R	S	L
Query Conservation
Alig confidence																										.	.																												.	.	.
Template Conservation																										.	.																												.	.	.
Template Sequence		F	V	E	M	F	V	G	V	G	A	A	R	V	R	D	L	F	E	T	A	K	R	H	A	.	.	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	N	D	E	R	E	Q	T	L	N	Q	L	L	.	.	.	V	E	M	D	G	F	E	K	D	T	A	I	V	V	M	A	A	T	N	R	P	D	I	L
Template Known Secondary structure					S	T	T	T															T	S		.	.	S							T																				.	.	.				T	T			T	T										S		T	T	S	S
Template Predicted Secondary structure																										.	.																												.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		S	K	E	D	P	D	Y	S	R	.	.	N	I	E	G	Q	V	I	R	L	H	W	D	W	A	Q	L	L	M	L	S	A	K	R	M	K	V	A	F	K	L	D	I	E	K	D	Q	R	V	W	D	R	C	T	A	D	D	L	K	G	R	N	G	F	K	R	C	L	Q	F	T	L	Y	R	P	R	D	L	L	S
Query Conservation											.	.
Alig confidence		.	.	.							.	.																														.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																						.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	D	P	A	L	L	R	P	G	R	F	D	R	Q	I	A	I	D	A	P	D	V	K	G	R	E	Q	I	L	R	I	H	A	R	G	K	P	L	.	.	.	.	A	E	D	V	D	L	A	L	L	A	K	R	T	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	G	A	D	L	E	N
Template Known Secondary structure		.	.	.						S	T	T	S	S																							T	T	S		B	.	.	.	.		T	T									T		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																						.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.														360	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	N	E	A	F	F	S	A	F	R	E	N	R	E	T	I	I	N	T	D	L	E	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K	D	L	E	E	A
Template Known Secondary structure													T	T			S	B
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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