 |
Job Description | P36655 | Confidence | 99.02% | Date | Thu Jan 5 11:53:30 GMT 2012 |
Rank | 135 | Aligned Residues | 89 |
% Identity | 16% | Template | c3kp8A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein; |
PDBTitle: the thioredoxin-like domain of a vkor homolog from2 synechococcus sp.
|
Resolution | 1.66 Å |
|
 |
  |   |
457 | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | E | L | N | Q | A | L | V | E | A | K | G | K | P | V | M | L | D | L | Y | A | D | W | C | V | A | C | K | E | F | E | K | Y | T | F | S | D | P | Q | V | Q | K | A | L | A | D | T | V | L | L | Q | A | N | V | T | A | N | D | A | Q | D | V | A | L | L | K | H | L | N | V | L | G | L | P | T | I | L | F | F | D |
Query Conservation |   |
  |   |   |   |   |
|
|
|   |   |   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |
|   |   |   |   | . | . | . | . | . | . |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|   |   |   | . | . |
Template Sequence |   |
S | P | L | A | V | G | L | A | A | H | L | R | Q | I | G | G | T | M | Y | G | A | Y | W | C | P | H | C | Q | D | Q | K | . |
. |
. |
. |
. |
. |
E | L | F | G | A | A | F | D | Q | V | P | Y | V | E | C | S | P | N | G | P | G | T | P | Q | A | Q | E | C | T | E | A | G | I | T | S | Y | P | T | W | I | I | . |
. |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
| T | T |
|  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  | G | G | G | G | G | G | S |
|  |  |  | S |
| T | T |
| T | T | S |
|
|
|  |  |  |  |  | T | T |
|
| S | S | S |  |  |  |  | . | . |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | |
|
  |
  |   |
537 | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | G | Q | E | H | P | Q | A | R | V | T | G | F | M | D | A | E | T | F | S | A | H |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |
Alig confidence |   |
. |
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |
|   | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
. |
N | G | R | . |
. |
. |
. |
. |
T | Y | T | G | V | R | S | L | E | A | L | A | V | A |
Template Known Secondary structure |   |
. | T | T |  | . | . | . | . | . |  |  |  | S |
|
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. |
|
|  | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
258 | . | 260 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 270 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|