 |
Job Description | P36655 | Confidence | 99.34% | Date | Thu Jan 5 11:53:30 GMT 2012 |
Rank | 81 | Aligned Residues | 127 |
% Identity | 23% | Template | c3hdcA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:thioredoxin family protein; |
PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens
|
Resolution | 1.77 Å |
|
 |
  |   |
433 | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | |
|
. | . | . | . | . | . | . | 510 |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
D | W | A | F | G | A | T | H | T | A | Q | T | Q | T | H | L | N | F | T | Q | I | K | T | V | D | E | L | N | Q | A | L | V | E | A | K | G | K | P | V | M | L | D | L | Y | A | D | W | C | V | A | C | K | E | F | E | K | Y | T | F | S | D | P | Q | V | Q | K | A | L | A | D | . |
. |
T | V | L | L | Q | A | N | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   | . | . |   |
|   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |
|   |
|   |   |
|
|   |
|
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
Template Sequence |   |
G | K | A | E | S | D | A | P | L | V | R | T | G | A | L | A | P | N | F | K | L | P | T | L | S | G | E | N | K | S | L | A | Q | Y | R | G | K | I | V | L | V | N | F | W | A | S | W | C | P | Y | C | R | D | E | X | P | S | X | . |
. |
. |
D | R | L | V | K | S | F | P | K | G | D | L | V | V | L | A | V | N | V |
Template Known Secondary structure |   |
|
|
|
|
|
| S |
|
|
|
| T | T | S | B |
|
|
|
|  |  |  |
| T | T | S |
|  |  |  | S | G | G | G | T | T | S |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  | S | S | T | T | S |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
24 | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
  |
  |   |
511 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | |
|
. | . | . | . | . | . | . | . | 560 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | A | N | D | A | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | V | A | L | L | K | H | L | N | V | L | G | L | P | T | I | L | F | F | D | G | Q | G | Q | E | H | P | Q | A | R | V | T | G | F | M | . |
. |
D | A | E | T | F | S | A | H | L | R | D | R | Q |
Query Conservation |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   | . | . |   |   |   |   |
|   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|   |
|   | . | . |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |
Template Sequence |   |
E | K | R | F | P | E | K | Y | R | R | A | P | V | S | F | N | F | L | S | D | A | T | G | Q | V | Q | Q | R | Y | G | A | N | R | L | P | D | T | F | I | V | D | R | K | G | I | I | R | . |
. |
Q | R | V | T | G | G | I | E | W | D | A | P | K | V | V | S | Y | L | K | S | L | E |
Template Known Secondary structure |   |
S | S | S |
|
| G | G | G | G | G |
|
|
| S |
|  |  |  |  |
| T | T | S |  |  |  |  |  | T | T |
|
| S | S | S |  |  |  |  |  |
| T | T | S | B |  |  | . | . |  |  |  |  | S |
|
|
| T | T | S |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  | . | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
101 | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
|
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|