 |
Job Description | P36655 | Confidence | 99.49% | Date | Thu Jan 5 11:53:30 GMT 2012 |
Rank | 40 | Aligned Residues | 98 |
% Identity | 19% | Template | c2e0qA_ |
PDB info |
PDB header:electron transport | Chain: A: PDB Molecule:thioredoxin; |
PDBTitle: crystal structure of k53e thioredoxin from sulfolobus2 tokodaii strain7
|
Resolution | 1.49 Å |
|
 |
  |   |
456 | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | D | E | L | N | Q | A | L | V | E | A | K | G | K | P | V | M | L | D | L | Y | A | D | W | C | V | A | C | K | E | F | E | K | Y | T | F | S | D | P | Q | V | Q | K | A | L | A | D | T | V | L | L | Q | A | N | V | T | A | N | D | A | Q | D | V | A | L | L | K | H | L | N | V | L | G | L | P | T | I | L | F | F |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|   |   |   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |
Template Sequence |   |
L | D | S | K | N | F | D | S | F | L | A | S | H | E | I | A | V | V | D | F | W | A | E | W | C | A | P | C | L | I | L | A | P | I | I | . |
. |
. |
E | E | L | A | E | D | Y | P | Q | V | G | F | G | K | L | N | S | D | E | N | . |
. |
. |
. |
P | D | I | A | A | R | Y | G | V | M | S | L | P | T | V | I | F | F |
Template Known Secondary structure |   |
|
| T | T | T |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  | T | T | T |
| . | . | . | . |  |  |  |  |  |  | T | T |
|
| S | S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . |
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
|
|
|
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
  |
  |   |
536 | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | G | Q | G | Q | E | H | P | Q | A | R | V | T | G | F | M | D | A | E | T | F | S | A | H | L | R | D | R |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
. |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |
|   |   |
| . | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
. |
K | D | G | E | P | V | . |
. |
D | E | I | I | G | A | V | P | R | E | E | I | E | I | R | I | K | N | L |
Template Known Secondary structure |   |
. |  | T | T |  |  |  | . | . |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. |
|
|
|  |  |  | . | . |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
113 | . | . | . | . | . | |
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|