Job Description P37650 Confidence 33.44% Date Wed Jan 25 15:20:52 GMT 2012 Rank 163 Aligned Residues 164 % Identity 12% Template d1kmoa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.00

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		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.		930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		P	M	G	F	N	V	V	D	V	V	G	G	I	S	Y	S	D	D	I	G	P	L	G	Y	T	V	N	A	H	R	R	P	I	S	S	S	L	L	A	F	G	G	Q	K	.	D	S	P	S	N	T	G	K	K	W	G	G	V	R	A	D	G	V	G	L	S	L	S	Y	D	K	G	E	A	N	G	V	W	A	S
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		G	N	V	E	P	E	K	A	R	T	W	E	L	G	T	R	Y	D	D	G	A	L	T	A	E	M	G	L	F	L	I	N	F	N	N	Q	Y	D	S	N	Q	T	N	D	T	V	T	A	R	G	K	T	R	H	T	G	L	E	T	Q	A	R	Y	D	L	G	T	L	T	P	T	L	D	N	V	S	I	Y	A	S
Template Known Secondary structure		S																			S	S																S	S			S	S	S			T	T																		G	G	G	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		965	.	.									.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.				.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.																																									.	.	.
Query SS confidence					.	.	.	.	.	.	.	.																																									.	.	.
Query Sequence		L	S	G	.	.	.	.	.	.	.	.	D	Q	L	T	G	K	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	.	.	.	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	G	Y	Y	S	P	Q	E	Y	L	S	F
Query Conservation					.	.	.	.	.	.	.	.																																									.	.	.
Alig confidence					.	.	.	.	.	.	.	.																									.	.	.	.	.												.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		Y	A	Y	V	N	A	E	I	R	E	K	G	D	T	Y	G	N	L	V	P	F	S	P	K	H	K	G	T	L	G	V	D	Y	K	P	.	.	.	.	.	G	N	W	T	F	N	L	N	S	D	F	Q	S	S	Q	F	A	D	N	A	N	T	V	K	E	S	A	D	G	S	T	G	R	I	P	G	F	M	L	W
Template Known Secondary structure											S	S	S	T	T	T	T		B		T	T			S												.	.	.	.	.	T	T													B		S	S	T	T				S			T	T	S	S	S	S		B
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.						.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	P	V	M	W	R	E	R	T	E	N	W	S	W	E	L	G	A	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	R	V	A	Y	D	F	G	P	Q	M	A	D	L	N	L	A	F	G	V
Template Known Secondary structure											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		685	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions