Job Description P37650 Confidence 88.59% Date Wed Jan 25 15:20:52 GMT 2012 Rank 139 Aligned Residues 222 % Identity 13% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	F	F	R	S	D	F	V	N	M	N	V	G	S	F	S	T	N	A	D	G	K	W	D	D	N	W	G	T	C	T	L	Q	D	C	S	G	N	R	S	Q	S	D	S	G	A	S	V	A	V	G	W	R	N	D	V	W	S	W	D	I	G	T	T	P	M	G	F	N	V	V	D	V	V	G	G	I	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	G	G	R	Y	D	W	A	D	Q	E	S	L	N	R	V	A	G	T	T	D	K	R	D	D	K	Q	F	T	W	R	G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y
Template Known Secondary structure																	T	T	T																						T	T	S																	B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		901	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.									970	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.
Query Sequence		S	D	D	I	G	P	L	G	Y	T	V	N	A	H	R	R	P	I	S	S	S	L	L	A	F	G	G	Q	K	D	S	P	S	N	T	G	K	K	W	G	G	V	R	A	D	G	V	G	L	S	L	S	Y	D	K	G	E	A	N	G	V	W	A	S	L	S	G	D	Q	.	.	.	.	.	.	.	.	L	T	G
Query Conservation																																																																							.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		V	P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S	F	.	.	.	.	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G
Template Known Secondary structure				S	S	S																					S	S			S	.	.	.	.																					S	S	S	S																		T	T	T	T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.					.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		973	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040				.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		K	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	G	Y	Y	S	P	Q	E	Y	L	S	F	A	I	P	V	M	W	R	.	.	.	E	R	T	E	N	W	S	W	E
Query Conservation																																																																						.	.	.
Alig confidence																																						.	.	.	.	.	.																											.	.	.
Template Conservation																																						.	.	.	.	.	.
Template Sequence		N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	.	.	.	.	.	.	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A
Template Known Secondary structure					T	T			S													S	S	T	T	T	T											.	.	.	.	.	.					S	S	T	T			S																T	T	T	T	T		T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.							640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		1050	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		678	.	680

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions