Phyre 2 alignment of P37650 with c3ulqA

Job Description P37650
Confidence 99.11% Date Wed Jan 25 15:20:52 GMT 2012

Rank 38 Aligned Residues 338

% Identity 10% Template c3ulqA_

PDB info PDB header:gene regulation/transcription activator Chain: A: PDB Molecule:response regulator aspartate phosphatase f; PDBTitle: crystal structure of the anti-activator rapf complexed with the2 response regulator coma dna binding domain

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	N	R	Y	W	L	A	I	Q	Q	G	D	A	A	L	K	A	N	N	P	D	R	A	E	R	L	F	Q	Q	A	R	N	V	D	N	T	D	S	Y	A	V	L	G	L	G	D	V	A	M	A	R	K	D	Y	P	A	A	E	R	Y	Y	Q	Q	T	L	R	M	D	S	G	N	T	N	A	V	R	G	L	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	S	S	I	G	E	K	I	N	E	W	Y	M	Y	I	R	R	F	S	I	P	D	A	E	Y	L	R	R	E	I	K	Q	E	L	D	Q	M	E	E	D	Q	D	L	H	L	Y	Y	S	L	M	E	F	R	H	N	L	M	L	E	Y	L	E	P	L	E	K	M	R	I	E	E	Q	P	R	L	S	D	L	L	L
Template Known Secondary structure																	T	T																		T	S																									G	G	G	G	G	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.

	428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.							.	.	.	.	500	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence	I	Y	R	Q	Q	S	P	E	K	A	E	A	F	I	A	S	L	S	A	S	Q	R	R	S	I	D	D	I	E	R	S	L	Q	N	D	R	L	A	Q	Q	A	E	A	L	E	N	Q	G	K	W	A	Q	A	A	A	L	Q	R	Q	R	L	A	L	D	P	G	S	V	.	.	.	.	.	.	W	I	T	Y	R	L
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	I	D	K	K	Q	A	R	L	T	G	L	L	E	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	F	F	R	G	M	Y	E	L	D	Q	R	E	Y	L	S	A	I	K	F	F	K	K	A	E	S	K	L	I	F	V	K	D	R	I	E	K	A	E	F	F	F	K	M
Template Known Secondary structure						T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T														T	T	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

	502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.								.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence	S	Q	D	L	W	Q	A	G	Q	R	S	Q	A	D	T	L	M	R	N	L	A	Q	Q	K	S	N	D	.	.	.	.	.	.	.	P	E	Q	V	Y	A	Y	G	L	Y	L	S	G	H	D	Q	D	R	A	A	L	A	H	I	N	S	L	P	R	A	Q	W	N	S	N	I	Q	E	L	V	N	R	L	Q	S	D
Query Conservation																												.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	E	S	Y	Y	Y	M	K	Q	T	Y	F	S	M	D	Y	A	R	Q	A	Y	E	I	Y	K	E	H	E	A	Y	N	I	R	L	L	Q	C	H	S	L	F	A	T	N	F	L	D	L	K	Q	Y	E	D	A	I	S	H	F	Q	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T																		T		S	T	T																		T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

	575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.							.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.
Query Sequence	Q	V	L	E	T	A	N	R	L	R	E	S	G	K	E	A	E	A	E	A	M	L	R	Q	Q	P	P	S	T	R	I	D	L	T	L	A	D	W	A	Q	Q	R	R	D	Y	T	A	A	R	A	A	Y	Q	N	V	L	T	R	.	.	.	.	.	.	E	P	A	N	A	D	A	I	L	G	L	T	E	V	D	I
Query Conservation																																																											.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	M	A	E	A	E	K	Q	P	Q	L	M	G	R	T	L	Y	N	I	G	L	C	K	N	S	Q	S	Q	Y	E	D	A	I	P	Y	F	K	R	A	I	A	V	F	E	E	S	N	I	L	P	S	L	P	Q	A	Y	F	L	I	T	Q	I	H	Y
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T																			T	T																			T	T		G	G	G
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.		.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence	A	A	G	D	K	A	A	A	R	S	Q	L	A	K	L	P	A	T	D	N	A	S	L	.	N	T	Q	R	R	V	A	L	A	Q	A	Q	L	G	D	T	A	A	A	Q	R	T	F	N	K	L	I	P	Q	A	K	S	Q	P	P	S	M	E	S	A	M	V	L	R	D	G	A	K	F	E	A	Q	A	G	D	P
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence	K	L	G	K	I	D	K	A	H	E	Y	H	S	K	G	M	A	Y	S	Q	K	A	G	D	V	I	Y	L	S	E	F	E	F	L	K	S	L	Y	L	S	G	P	D	E	E	A	I	Q	G	F	F	D	F	L	E	S	K	M	L	Y	A	D	L	E	D	F	A	I	D	V	A	K	Y	Y	H	E	R	K	N	F
Template Known Secondary structure		T	T																				T																T	S	S																T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

	728	.	730	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	Q	A	L	E	T	Y	K	D	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	K	A	S	A	Y	F	L	K	V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	354	.	.	.	.	.	360	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions