Job Description P37650 Confidence 99.53% Date Wed Jan 25 15:20:52 GMT 2012 Rank 23 Aligned Residues 262 % Identity 11% Template c3q75A_ PDB info PDB header:transferase Chain: A: PDB Molecule:farnesyltransferase alpha subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide Resolution 2.14 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	P	T	A	Q	Q	Q	L	L	E	Q	V	R	L	G	E	A	T	H	R	E	D	L	V	Q	Q	S	L	Y	R	L	E	L	I	D	P	N	N	P	D	V	V	A	A	R	F	R	S	L	L	R	Q	G	D	.	I	D	G	A	Q	K	Q	L	D	R	L	S	Q	L	A	P	S	S	N	A	Y	K	S	S	R
Query Conservation																																																								.
Alig confidence																																																								.																									.
Template Conservation																																																																																	.
Template Sequence		S	E	E	Y	K	D	A	M	D	Y	F	R	A	I	A	A	K	E	E	K	S	E	R	A	L	E	L	T	E	I	I	V	R	M	N	P	A	H	Y	T	V	W	Q	Y	R	F	S	L	L	T	S	L	N	K	S	L	E	D	E	L	R	L	M	N	E	F	A	V	Q	N	L	K	S	Y	Q	V	W	H	H	.
Template Known Secondary structure																			T			S															T	T															T	T																	T	T	T								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.
Query Sequence		T	T	M	L	L	S	T	P	D	G	R	Q	A	L	Q	Q	A	R	L	Q	A	T	T	G	H	A	E	E	A	V	A	S	Y	N	K	L	F	N	G	A	P	P	E	G	D	I	A	V	E	Y	W	S	T	V	A	K	I	.	.	.	.	.	.	.	.	P	A	R	R	G	E	A	I	N	Q	L	K	R	I	N
Query Conservation																																																											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.												.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	L	L	L	D	R	I	S	P	Q	D	P	V	S	E	I	E	Y	I	H	G	S	L	L	P	D	P	K	N	Y	H	.	T	W	A	Y	L	H	W	L	Y	S	H	F	S	T	L	G	R	I	S	E	A	Q	W	G	S	E	L	D	W	C	N	E	M	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.											S													T	S	S		T	T				.															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
															115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.								.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.
Query Sequence		A	D	A	P	G	N	T	G	L	Q	N	N	L	A	L	L	L	F	S	S	D	R	.	.	.	.	.	.	.	R	D	E	G	F	A	V	L	E	Q	M	A	K	S	N	A	G	R	E	G	A	S	K	I	W	Y	G	Q	I	K	D	M	P	V	S	D	A	S	V	S	A	L	K	K	Y	L	S	I	F	S	D
Query Conservation																								.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	D	G	R	N	N	S	A	W	G	W	R	W	Y	L	R	V	S	R	P	G	A	E	T	S	S	R	S	L	Q	D	E	L	I	Y	I	L	K	S	I	H	L	I	P	H	N	V	S	A	W	N	Y	L	R	G	F	L	K	H	F	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T													T	T	S	T	T																							T	T															T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	S	V	A	A	A	Q	S	Q	L	A	E	Q	Q	K	Q	L	A	D	P	A	F	R	A	R	A	Q	G	L	A	A	V	D	S	G	M	A	G	K	A	I	P	E	L	Q	Q	A	V	R	A	N	P	K	D	S	E	A	L	G	A	L	G	Q	A	Y	S	Q	K	G	D	R	A	N	A	V	A	N	L	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	P	I	L	P	A	I	L	P	Y	T	A	F	P	M	P	S	D	L	P	E	D	T	P	L	P	V	P	L	A	L	E	Y	L	A	D	S	F	I	E	Q	N	R	V	D	D	A	A	K	V	F	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	G	G	G	G	G	G	T	G	G	G	G										S	S			S																T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		328		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		K	.	A	L	A	L	D	P	H	S	S	N	N	D	K	W	N
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		K	L	S	S	E	Y	D	Q	M	R	A	G	Y	W	E	F	R
Template Known Secondary structure						T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions