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Job DescriptionP37650
Confidence96.93%DateWed Jan 25 15:20:52 GMT 2012
Rank114Aligned Residues131
% Identity16%Templatec3nb3C_
PDB info PDB header:virusChain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
Resolution19.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   960.........970.........980.........990.........1000.........1010.........1020.........1030.........
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Query Sequence  GVWASLSGDQLTGKNVEDNWRVRWMTGYYYKVINQNNRRVTIGLNNMIWHYDKDLSGYSLGQGGYYSPQEYLSFAIPVMW
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Template Sequence  TWYTGAKLGW. . . SQHENKLGAGAFGGYQVN. . . . . . PYVGFEMGYDWLGRMPYAY. . . . . . . . . . . . . KAQGVQLTAKL
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   6...10..... ....20.........30... ......40.........50.. .......60...
 
   1040.. .......1050.........1060.........1070.........1080.........1090.........1100.........1110........
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Query Sequence  RER. TENWSWELGASGSWSHSRTKTMPRYPLMNLIPTDWQEEAARQSNDGGSSQGFGYTARALLERRVTSNWFVGTAIDI
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Template Sequence  GYPITDDLDIYTRLGGMVWRADTYS. . . . . . . . . . . . . . . . . . . . NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQ.
Template Known Secondary structure  SSSS
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   84.....90.........100........ .110.........120.........130.........140..
 
   11191120.........1130........
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Query Sequence  QQAKDYAPSHFLLYVRYSAA
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Template Sequence  . . . . . WTNGMLSLGVSYRFG
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   143......150.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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