Job Description P37650 Confidence 96.93% Date Wed Jan 25 15:20:52 GMT 2012 Rank 114 Aligned Residues 131 % Identity 16% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	W	A	S	L	S	G	D	Q	L	T	G	K	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	G	Y	Y	S	P	Q	E	Y	L	S	F	A	I	P	V	M	W
Query Conservation
Alig confidence												.	.	.																			.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																			.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	Y	T	G	A	K	L	G	W	.	.	.	S	Q	H	E	N	K	L	G	A	G	A	F	G	G	Y	Q	V	N	.	.	.	.	.	.	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	Y	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	Q	G	V	Q	L	T	A	K	L
Template Known Secondary structure												.	.	.																			.	.	.	.	.	.	T	T																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.																			.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.														.	.	.	.	.	.	.	60	.	.	.
		1040	.	.		.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		R	E	R	.	T	E	N	W	S	W	E	L	G	A	S	G	S	W	S	H	S	R	T	K	T	M	P	R	Y	P	L	M	N	L	I	P	T	D	W	Q	E	E	A	A	R	Q	S	N	D	G	G	S	S	Q	G	F	G	Y	T	A	R	A	L	L	E	R	R	V	T	S	N	W	F	V	G	T	A	I	D	I
Query Conservation					.
Alig confidence					.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Sequence		G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	.
Template Known Secondary structure					S	S	S	S																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S																						T	T									.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		1119	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	K	D	Y	A	P	S	H	F	L	L	Y	V	R	Y	S	A	A
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	W	T	N	G	M	L	S	L	G	V	S	Y	R	F	G
Template Known Secondary structure		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							143	.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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