Job Description P37650 Confidence 99.40% Date Wed Jan 25 15:20:52 GMT 2012 Rank 30 Aligned Residues 236 % Identity 15% Template c3mv3B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 3.25 Å

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		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.																				.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	L	E	N	Q	G	K	W	A	Q	A	A	A	L	Q	R	Q	R	L	A	L	D	P	G	S	V	W	I	T	Y	R	L	S	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	Q	A	G	Q	R	S	Q	A	D	T	L	M	R	N	L	A	Q	Q	K	S	N	D	P
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	Q	N	Y	Y	T	G	N	F	V	Q	C	L	Q	E	I	E	K	F	S	K	V	T	D	N	T	L	L	F	Y	K	A	K	T	L	L	A	L	G	Q	Y	Q	S	Q	D	P	T	S	K	L	G	K	V	L	D	L	Y	V	Q	F	L	D	T	K	N	I	E	E	L	E	N	L	L	K	D	K	Q	N	S	P
Template Known Secondary structure						T	T	T											T	S	T	T																	S	S							S		S	T	T												T	S	S								T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	V	Y	A	Y	G	L	Y	L	S	G	H	D	Q	D	R	A	A	L	A	H	I	N	S	L	P	R	A	Q	W	N	S	N	I	Q	E	L	V	N	R	L	Q	S	D	Q	V	L	E	T	A	N	R	L	R	E	S	G	K	E	A	E	A	E	A	M	L	R	Q	Q	P	P	S	T	R	I	D	L	T	L
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	L	Y	L	L	A	T	A	Q	A	I	L	G	D	L	D	K	S	L	E	T	C	V	E	G	I	D	N	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	T	T	E	L	L	L	L	A
Template Known Secondary structure															T														T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																																							.	.	120	.	.	.	.	.	.	.	.
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.									.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.
Query Sequence		A	D	W	A	Q	Q	R	R	D	Y	T	A	A	R	A	A	Y	Q	N	V	L	T	R	E	P	A	N	A	D	.	.	.	.	.	.	.	.	A	I	L	G	L	T	E	V	D	I	A	A	G	D	K	A	A	A	R	S	Q	L	A	K	L	P	A	T	D	N	A	S	L	N	T	Q	R	R	V	A	L	A	Q
Query Conservation																															.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.																															.
Template Conservation																																																																					.
Template Sequence		I	E	V	A	L	L	N	N	N	V	S	T	A	S	T	I	F	D	N	Y	T	N	A	I	E	D	T	V	S	G	D	N	E	X	I	L	N	L	A	E	S	Y	I	K	F	A	T	N	K	E	T	A	T	S	N	F	Y	Y	Y	E	E	L	S	Q	T	F	P	.	T	W	K	T	Q	L	G	L	L	N	L	H
Template Known Secondary structure								T	T														T	T		T	T	T			S	S	T																	T	T	T	T	T													S		.	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.
		682	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710					.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		A	Q	L	G	D	T	A	A	A	Q	R	T	F	N	K	L	I	P	Q	A	K	S	Q	P	P	S	M	E	S	.	.	.	.	A	M	V	L	R	D	G	A	K	F	E	A	Q	A	G	D	P	T	Q	A	L	E	T	Y	K	D	A	M	V	A	S	G	V	T	T
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.																	.	.
Template Conservation																																																			.	.
Template Sequence		L	Q	Q	R	N	I	A	E	A	Q	G	I	V	E	L	L	L	S	D	Y	Y	S	V	E	Q	K	E	N	A	V	L	Y	K	P	T	F	L	A	N	Q	I	T	L	A	L	X	Q	G	L	.	.	D	T	E	D	L	T	N	Q	L	V	K	L	D	H	E	H	A
Template Known Secondary structure				T	T														S					T	T	T						T	T															T	T		.	.	T	T										T	T			S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions