Job Description P37650 Confidence 99.50% Date Wed Jan 25 15:20:52 GMT 2012 Rank 26 Aligned Residues 260 % Identity 14% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		A	E	A	L	E	N	Q	G	K	W	A	Q	A	A	A	L	Q	R	Q	R	L	A	L	D	P	G	S	V	.	W	I	T	Y	R	L	S	Q	D	L	W	Q	A	G	Q	R	S	Q	A	D	T	L	M	R	N	L	A	Q	Q	K	S	N	D	P	E	Q	V	Y	A	Y	G	L	Y	L	S	G	H	D	Q	D	R
Query Conservation																														.
Alig confidence																														.																										.	.	.
Template Conservation																																																								.	.	.
Template Sequence		V	K	N	A	F	Y	I	G	S	Y	Q	Q	C	I	N	E	A	Q	R	V	K	P	S	S	P	E	R	D	V	E	R	D	V	F	L	Y	R	A	Y	L	A	Q	R	K	Y	G	V	V	L	D	E	I	K	P	.	.	.	S	S	A	P	E	L	Q	A	V	R	M	F	A	E	Y	L	A	S	H	S	R	R	D
Template Known Secondary structure								T	T												S				S																		T	T									S		T	.	.	.	T	S																	S	T	T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	A	H	I	N	S	L	P	R	A	Q	W	N	S	N	I	Q	E	L	V	N	R	L	Q	S	D	Q	V	L	E	T	A	N	R	L	R	E	S	G	K	E	A	E	A	E	A	M	L	R	Q	Q	P	P	S	T	R	I	D	L	T	L	A	D	W	A	Q	Q	R	R	D	Y	T	A	A	R	A	A	Y
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.																												.
Template Conservation																			.	.	.	.	.	.	.	.																												.
Template Sequence		A	I	V	A	E	L	D	R	E	M	S	R	S	V	D	V	T	.	.	.	.	.	.	.	.	N	T	T	F	L	L	M	A	A	S	I	Y	F	Y	D	Q	N	P	D	A	A	L	R	T	L	H	Q	.	G	D	S	L	E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L	A	R	K	E	L
Template Known Secondary structure													S					S	.	.	.	.	.	.	.	.															T	T										T	T	.			S														T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																												.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650			.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		Q	N	V	L	T	R	E	P	A	N	A	D	A	I	L	G	L	T	E	V	D	I	A	A	.	.	G	D	K	A	A	A	R	S	Q	L	A	K	L	P	A	T	D	N	A	S	L	N	T	Q	R	R	V	A	L	A	Q	A	Q	L	G	D	T	A	A	A	Q	R	T	F	N	K	L	I	P	Q	A	K	S	Q
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		K	K	M	Q	D	Q	D	E	D	A	T	L	T	Q	L	A	T	A	W	V	S	L	A	A	G	G	E	K	L	Q	D	A	Y	Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H	M	A	Q	G	R	W	E	A	A	E	G	V	L	Q	E	A	L	D	K	D	S	G	H
Template Known Secondary structure									T	T																	T	T																S																	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.		.	.	.	.	.	740	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		P	P	S	M	E	S	A	M	V	L	R	D	G	A	K	F	E	A	Q	A	G	D	P	T	Q	A	L	E	T	Y	.	K	D	A	M	V	A	S	G	V	T	T
Query Conservation																																.
Alig confidence			.	.	.	.	.	.																								.
Template Conservation			.	.	.	.	.	.
Template Sequence		P	.	.	.	.	.	.	E	T	L	I	N	L	V	V	L	S	Q	H	L	G	K	P	P	E	V	T	N	R	Y	L	S	Q	L	K	D	A	H	R	S	H	P
Template Known Secondary structure			.	.	.	.	.	.													T	T																		T	T
Template Predicted Secondary structure			.	.	.	.	.	.
Template SS confidence
		250							.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions