Job Description P37650 Confidence 96.76% Date Wed Jan 25 15:20:52 GMT 2012 Rank 116 Aligned Residues 143 % Identity 15% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	E	A	T	H	R	E	D	L	V	Q	Q	S	L	Y	R	L	E	L	I	D	P	N	N	P	D	V	V	A	A	R	F	R	S	L	L	R	Q	G	D	I	D	G	A	Q	K	Q	L	D	R	L	S	Q	L	A	P	S	S	N	A	Y	K	S	S	R	T	T	M	L	L	S	T	P	D	G	R	Q	A
Query Conservation
Alig confidence																			.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Sequence		E	L	A	L	K	V	G	Q	L	T	L	A	R	D	L	L	T	.	.	.	.	.	D	E	S	A	E	M	K	W	R	A	L	G	D	A	S	L	Q	R	F	N	F	K	L	A	I	E	A	F	T	N	A	H	D	.	.	.	.	.	.	.	.	L	E	S	L	F	L	L	H	S	S	F	N	N	K	E	G	L
Template Known Secondary structure								T										T	.	.	.	.	.	T																	T	T													T		.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure																			.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.						.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.									710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	A	R	L	Q	A	T	T	G	H	A	E	E	A	V	A	S	Y	N	K	L	F	N	G	A	P	P	E	G	D	I	A	V	E	Y	W	S	T	V	A	K	I	P	A	R	R	G	E	A	I	N	Q	L	K	R	I	N	A	D	A	P	G	N	T	G	L	Q	N	N	L	A	L	L	L	F	S	S	D
Query Conservation
Alig confidence																									.	.	.	.	.														.	.	.	.
Template Conservation																									.	.	.	.	.														.	.	.	.
Template Sequence		V	T	L	A	K	D	A	E	T	T	G	K	F	N	L	A	F	N	A	Y	W	I	A	.	.	.	.	.	G	D	I	Q	G	A	K	D	L	L	I	K	S	.	.	.	.	Q	R	F	S	E	A	A	F	L	G	S	T	Y	G	L	G	D	N	E	V	N	D	I	V	T	K	W	K	E	N	L	I	L	N	G
Template Known Secondary structure											T	T													.	.	.	.	.	T												T	.	.	.	.	T												T	T																			T	T	T
Template Predicted Secondary structure																									.	.	.	.	.														.	.	.	.
Template SS confidence
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.						750	.	.	.	.	.	.	.	.	.	760	.	.					.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
		196	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	D	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	T	V	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions