Job Description P37650 Confidence 94.14% Date Wed Jan 25 15:20:52 GMT 2012 Rank 126 Aligned Residues 190 % Identity 18% Template c3dwoX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Resolution 2.20 Å

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		940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.																													970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	V	R	A	D	G	V	G	L	S	L	S	Y	D	K	G	E	A	N	G	V	W	A	S	L	S	G	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	G	K	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	I	E	T	I	G	L	T	G	S	L	S	F	K	V	N	D	N	F	S	L	G	A	G	V	I	I	Q	R	T	S	G	F	V	S	Q	N	L	D	L	Y	A	S	A	A	N	S	P	G	M	G	G	I	P	F	P	A	S	N	S	S	A	L	M	R	V	K	V	D	N	T	S	P	G	F	F	A	G	A
Template Known Secondary structure																	S	S	S	S																												T	S	T	T	T		S	S				T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		992	.	.	.	.	.	.	.	1000	.	.	.	.	.	.				.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.																				.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.						.	.
Predicted Secondary structure																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query SS confidence																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query Sequence		I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	.	.	.	I	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	Y	S	P	Q	E	Y	L	S	F	A	I	P	V	M	W	R	E	R	.	.	.	.	.	T	E
Query Conservation																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Alig confidence																	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation
Template Sequence		V	W	K	P	T	D	R	D	T	L	G	F	A	Y	H	A	K	I	R	N	K	L	K	G	H	Y	N	L	Y	D	H	D	G	G	L	T	E	G	A	I	E	G	G	T	P	G	L	A	Y	P	G	L	D	L	R	M	G	A	S	A	S	A	R	L	D	I	P	A	Y	A	S	L	D	W	V	H	Q	F	N	D
Template Known Secondary structure					S	S	S	S											B														S	T	T								T	T						S	T	T					S										B													S	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		1045	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		N	W	S	W	E	L	G	A	S	G	S	W	S	H	S	R	T	K	T	M	P	R	Y	P	L	M	N	L	I	P	T	D	W	Q	E	E	A	A	R	Q	S	N	D	G	G	S	S	Q	G	F	G	Y	T	A	R	A	L	L	E	R	R	V	T	S	N	W	F	V	G	T	A	I	D	I	Q	Q	A	K	.	.
Query Conservation																																																																																.	.
Alig confidence					.	.																																		.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation					.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	S	.	.	L	G	A	S	A	T	W	T	E	W	S	S	F	Q	D	L	T	L	K	S	H	G	N	T	I	V	S	I	P	Y	T	Y	R	.	.	.	.	.	.	.	.	.	.	.	N	T	W	T	L	A	V	G	G	D	Y	K	V	T	D	Q	W	T	M	R	A	G	V	A	Y	D	Q	T	P	T	H
Template Known Secondary structure		S			.	.										G	G	G									T	T												.	.	.	.	.	.	.	.	.	.	.													S	S	S	S													S
Template Predicted Secondary structure					.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		299	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.												.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
											1123	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	D	Y	A	P	S	H	F	L	L	Y	V	R	Y	S	A	A	G	W	Q	G
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	T	R	D	P	R	I	P	D	G	D	R	Y	F	A	S	L	G	A	G	Y	R	F	Q	S	M	P	E
Template Known Secondary structure		T	T	T			S	S	S																	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions