Job Description P37650 Confidence 92.59% Date Wed Jan 25 15:20:52 GMT 2012 Rank 129 Aligned Residues 255 % Identity 12% Template c3brzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.			.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																																		.	.	.	.	.	.	.	.
Query SS confidence																																							.	.																																		.	.	.	.	.	.	.	.
Query Sequence		A	V	G	W	R	N	D	V	W	S	W	D	I	G	T	T	P	M	G	F	N	V	V	D	V	V	G	G	I	S	Y	S	D	D	I	G	P	.	.	L	G	Y	T	V	N	A	H	R	R	P	I	S	S	S	L	L	A	F	G	G	Q	K	D	S	P	S	N	T	G	K	K	W	.	.	.	.	.	.	.	.
Query Conservation																																							.	.																																		.	.	.	.	.	.	.	.
Alig confidence																																							.	.																											.	.	.					.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		T	L	S	F	A	P	D	G	N	Q	F	E	L	G	L	D	V	V	T	T	D	I	K	V	H	G	A	E	A	K	S	S	T	P	Y	V	G	P	Q	L	S	Y	V	A	Q	L	D	D	W	R	F	G	A	G	L	F	V	S	S	G	L	G	T	E	Y	.	.	.	G	S	K	S	F	L	S	Q	T	E	N	G
Template Known Secondary structure		G	G	G	G	S		S	S						B						B											S																T	T																		.	.	.		T	T	S	G	G	G			T	T	T
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.
										940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	G	G	V	R	A	D	G	V	G	L	S	L	S	Y	D	K	G	E	A	N	G	V	W	A	S	L	S	G	D	Q	L	T	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Q	T	S	F	D	N	S	S	R	L	I	V	L	R	A	P	I	G	F	S	Y	Q	A	T	S	K	L	T	F	G	A	S	V	D	L	V	W	T	S	L	N	L	E	L	L	L	P	S	S	Q	V	G	A	L	T	A	Q	G	N	L	S	G	G	L	V	P	S	L	A	G	F	V	G	T	G	G	A	A	H
Template Known Secondary structure																									S	S	S	S																															T	T					S						T	T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
				974	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.																		.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.
Predicted Secondary structure		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	W	H	Y	D	K	D	L	S	G	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Q	G	G	Y	Y	S	P	Q	E	Y	L	S	F	A
Query Conservation		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		F	S	L	S	A	G	G	A	V	D	A	V	G	W	G	G	R	L	G	L	T	Y	K	L	T	D	N	T	V	L	G	A	M	Y	N	F	K	T	S	V	G	D	L	E	G	K	A	T	L	S	A	I	S	G	D	G	A	V	L	P	L	D	G	D	I	R	V	K	N	F	E	M	P	A	S	L	.	.	.	.
Template Known Secondary structure									T	T																S	S	S											B																T	T	S																B					.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		1035	.	.	.	.	1040	.	.		.	.	.	.	.	.	.	1050	.	.	.		.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.
Predicted Secondary structure										.												.
Query SS confidence										.												.
Query Sequence		I	P	V	M	W	R	E	R	.	T	E	N	W	S	W	E	L	G	A	S	.	G	S	W	S	H	S	R	T	K	T	M	P	R	Y	P	L	M	N	L	I	P	T	D	W	Q	E	E	A	A	R	Q	S	N	D	G	G	S	S	Q	G	F	G	Y	T	A	R	A	L	L	E	R	R	V	T	S	N	W	F	V
Query Conservation										.												.
Alig confidence		.								.												.																												.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		.	T	L	G	L	A	H	Q	F	N	E	R	W	V	V	A	A	D	I	K	R	A	Y	W	G	D	V	M	D	S	M	N	V	A	F	I	S	Q	L	G	G	I	D	V	A	L	P	H	.	.	.	.	.	.	.	.	.	.	R	Y	Q	D	I	T	V	A	S	I	G	T	A	Y	K	Y	N	N	D	L	T	L
Template Known Secondary structure		.								S	S	S	S													T	T			S									S	S										.	.	.	.	.	.	.	.	.	.																S	S	S	S
Template Predicted Secondary structure		.																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
			282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.											.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		1113	.	.	.	.	.	.	1120	.						.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.
Predicted Secondary structure											.	.	.	.	.
Query SS confidence											.	.	.	.	.
Query Sequence		G	T	A	I	D	I	Q	Q	A	.	.	.	.	.	K	D	Y	A	P	S	H	F	L	L	Y	V	R	Y	S	A	A	G	W	Q	G
Query Conservation											.	.	.	.	.
Alig confidence											.	.	.	.	.
Template Conservation
Template Sequence		R	A	G	Y	S	Y	A	Q	L	I	L	P	V	I	P	A	Y	L	K	R	H	V	T	F	G	G	E	Y	D	F	D	K	D	S	R
Template Known Secondary structure													T	T	S					S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions