Job Description P37650 Confidence 41.29% Date Wed Jan 25 15:20:52 GMT 2012 Rank 154 Aligned Residues 195 % Identity 9% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		898	.	900		.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		I	S	Y	.	S	D	D	I	G	P	L	G	Y	T	V	N	A	H	R	R	P	I	S	S	S	L	L	A	F	G	G	Q	K	D	S	P	S	N	T	G	K	K	W	G	G	V	R	A	D	G	V	G	L	S	L	S	Y	D	K	G	E	A	N	G	V	W	A	S	L	S	G	D	Q	L	T	G	K	N	V	E
Query Conservation					.
Alig confidence					.													.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		V	R	Y	D	S	P	V	F	A	G	F	S	G	S	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	P	R	D	N	A	N	D	V	D	K	Y	K	H	T	K	S	S	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	.	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D
Template Known Secondary structure									B	T	T							.	.	.	.	.	.	.	.	.	.	.	.									S	T	T	S	S	S	T	T	S															T	T	.																	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.													150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
										977	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	G	Y	Y	S	P	Q	E	Y	L	S	F	A	I	P	V	M	W	R	E	R	T	E	N	W	S	W
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.
Template Sequence		A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	.	.	.	.	.	.	.	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	G	N	V	T	P
Template Known Secondary structure		S		B			T	T		T	T																			T	T																S	S	S	.	.	.	.	.	.	.	T	T	T	T																B	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		1049	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		E	L	G	A	S	G	S	W	S	H	S	R	T	K	T	M	P	R	Y	P	L	M	N	L	I	P	T	D	W	Q	E	E	A	A	R	Q	S	N	D	G	G	S	S	Q	G	F	G	Y	T	A	R	A	L	L	E	R	R	V	T	S	N	W	F	V	G	T	A	I	D	I	Q	Q	A	K	D	.	.	.	.	Y
Query Conservation																																																																													.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	Q	G	K	G	A	G	K	V
Template Known Secondary structure														T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G													S	S	S	S													S	S	T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.																										290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		1125	.	.	.	.	1130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	S	H	F	L	L	Y	V	R	Y	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions