Job Description P37650 Confidence 65.03% Date Wed Jan 25 15:20:52 GMT 2012 Rank 151 Aligned Residues 201 % Identity 13% Template c2k4tA_ PDB info PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles Resolution UNK

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		872	.	.	.	.	.	.	.	880	.	.	.	.		.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.				.	.	.
Predicted Secondary structure															.																																																													.	.	.
Query SS confidence															.																																																													.	.	.
Query Sequence		G	W	R	N	D	V	W	S	W	D	I	G	T	.	T	P	M	G	F	N	V	V	D	V	V	G	G	I	S	Y	S	D	D	I	G	P	L	G	Y	T	V	N	A	H	R	R	P	I	S	S	S	L	L	A	F	G	G	Q	K	D	S	P	S	N	T	G	K	K	W	G	G	V	R	A	.	.	.	D	G	V
Query Conservation															.																																																													.	.	.
Alig confidence															.												.	.	.																			.															.													.	.	.
Template Conservation																											.	.	.																			.															.
Template Sequence		G	Y	G	F	G	L	I	K	L	D	L	K	T	K	S	E	N	G	L	E	F	T	S	S	G	.	.	.	S	A	N	T	E	T	T	K	V	T	G	S	L	E	T	K	Y	R	.	W	T	E	Y	G	L	T	F	T	E	K	W	N	T	.	D	N	T	L	G	T	E	I	T	V	E	D	Q	L	A	R	G	L
Template Known Secondary structure					S												T	T	T								.	.	.				S	S	S													.			S	B										T	.	T	T												T	T
Template Predicted Secondary structure																											.	.	.																			.															.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.					.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		G	L	S	L	S	Y	D	K	G	E	A	N	G	V	W	A	S	L	S	G	D	Q	L	T	G	K	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	.	.	.	.	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	G
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.										.	.																							.	.	.
Template Conservation																																																							.	.																							.	.	.
Template Sequence		K	L	T	F	D	S	S	F	S	P	N	T	G	K	K	N	A	K	I	K	T	G	Y	K	R	E	H	I	N	L	G	C	D	M	D	F	D	I	A	G	P	S	I	R	G	A	L	V	L	G	Y	E	G	.	.	W	L	A	G	Y	Q	M	N	F	E	T	A	K	S	R	V	T	Q	S	N	F	A	.	.	.
Template Known Secondary structure											T	T	T														S	S										S	S	S	S												T	T	.	.											T	T	T	T	S								.	.	.
Template Predicted Secondary structure																																																							.	.																							.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		1024	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	S	P	Q	E	Y	L	S	F	A	I	P	V	M	W	R	E	R	T	E	N	W	S	W	E	L	G	A	S	G	S	W	S	H	S	R	T	K	T	M	P	R	Y	P	L	M	N	L	I	P	T	D	W	Q	E	E	A	A	R	Q	S	N	D	G	G	S	S	Q	G	F	G	Y	T	A	R	A	L	L	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	Y	K	T	D	E	F	Q	L	H	T	N	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	E	F	G	G	S	I	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			171	.	.	.	.	.	.	.	.	180	.	.	.	.	.																																							.	.	.	.	190	.	.	.	.	.
		1104	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	V	T	S	N	W	F	V	G	T	A	I	D	I	Q	Q	A	K	D	Y	A	P	S	H	F	L	L	Y	V	R	Y	S	A	A	G
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		Q	K	V	N	K	K	L	E	T	A	V	N	L	A	W	T	A	G	N	.	.	S	N	T	R	F	G	I	A	A	K	Y	Q	I	D	P
Template Known Secondary structure					S	T	T											T	T	S	.	.	S														T
Template Predicted Secondary structure																					.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions