Job Description P37650 Confidence 94.53% Date Wed Jan 25 15:20:52 GMT 2012 Rank 125 Aligned Residues 143 % Identity 10% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	W	A	S	L	S	G	D	Q	L	T	G	K	N	V	E	D	N	W	R	V	R	W	M	T	G	Y	Y	Y	K	V	I	N	Q	N	N	R	R	V	T	I	G	L	N	N	M	I	W	H	Y	D	K	D	L	S	G	Y	S	L	G	Q	G	G	Y	Y	S	P	Q	E	Y	L	S	F	A	I	P	V	M	W
Query Conservation
Alig confidence											.	.	.																					.				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.																					.				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	Y	T	G	A	K	L	G	.	.	.	W	S	Q	Y	S	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	.	N	P	Y	.	.	.	.	.	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	R	K	A	Q	G	V	.	.	.	.	.	.	.	.	.	.	.	Q	L	T	A	K	L	G	Y
Template Known Secondary structure											.	.	.			T	T			S	S													.	S	S	S	.	.	.	.	.												S	S	S	S						.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.																					.				.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.												.	.	60	.	.	.	.	.
		1040	.	.		.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110			.	.	.	.	.	.
Predicted Secondary structure					.																																																																					.	.
Query SS confidence					.																																																																					.	.
Query Sequence		R	E	R	.	T	E	N	W	S	W	E	L	G	A	S	G	S	W	S	H	S	R	T	K	T	M	P	R	Y	P	L	M	N	L	I	P	T	D	W	Q	E	E	A	A	R	Q	S	N	D	G	G	S	S	Q	G	F	G	Y	T	A	R	A	L	L	E	R	R	V	T	S	N	W	.	.	F	V	G	T	A	I
Query Conservation					.																																																																					.	.
Alig confidence					.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L
Template Known Secondary structure			T	T		T	T	T													S	S	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S						B																S	S	S		S	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90																		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		1117	.	.	1120	.	.	.		.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		D	I	Q	Q	A	K	D	.	Y	A	P	S	H	F	L	L	Y	V	R	Y	S	A	A	G
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		E	Y	Q	W	T	N	N	A	S	D	N	G	M	L	S	L	G	V	S	Y	R	F	G	Q
Template Known Secondary structure							S	S	S	S													S		S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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