Job Description P37650 Confidence 99.49% Date Wed Jan 25 15:20:52 GMT 2012 Rank 27 Aligned Residues 265 % Identity 11% Template c1tnoI_ PDB info PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b Resolution 2.70 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	P	T	A	Q	Q	Q	L	L	E	Q	V	R	L	G	E	A	T	H	R	E	D	L	V	Q	Q	S	L	Y	R	L	E	L	I	D	P	N	N	P	D	V	V	A	A	R	F	R	S	L	L	R	Q	G	D	.	I	D	G	A	Q	K	Q	L	D	R	L	S	Q	L	A	P	S	S	N	A	Y	K	S	S	R
Query Conservation																																																								.
Alig confidence																																																								.																							.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		S	E	K	F	R	D	V	Y	D	Y	F	R	A	V	L	Q	R	D	E	R	S	E	R	A	F	K	L	T	R	D	A	I	E	L	N	A	A	N	Y	T	V	W	H	F	R	R	V	L	L	R	S	L	Q	K	D	L	Q	E	E	M	N	Y	I	I	A	I	I	E	E	Q	P	K	N	Y	Q	V	W	.	.	.
Template Known Secondary structure																		T	T																		T	T															T	T																		T	T						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	M	L	L	S	T	P	D	G	R	Q	A	L	Q	Q	A	R	L	Q	A	T	T	G	H	A	E	E	A	V	A	S	Y	N	K	L	F	N	G	A	P	P	E	G	D	I	A	V	E	Y	W	S	T	V	A	K	I	P	A	R	R	G	E	A	I	N	Q	L	K	R	I	N	A	D	A	P	G	N	T	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	R	R	V	L	V	E	W	L	K	D	P	S	Q	E	L	E	F	I	A	D	I	L	N	Q	D	A	K	N	Y	H	.	A	W	Q	H	R	Q	W	V	I	Q	E	F	R	L	W	D	N	E	L	Q	Y	V	D	Q	L	L	K	E	D	V	R	N	N	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.											T			T	T									T	T	T		T	T				.												T	T			T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
															170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																		.
Query SS confidence																	.	.	.	.	.	.																																		.
Query Sequence		L	Q	N	N	L	A	L	L	L	F	S	S	D	R	R	.	.	.	.	.	.	D	E	G	F	A	V	L	E	Q	M	A	K	S	N	A	G	R	E	G	A	S	K	I	W	Y	G	Q	I	K	D	M	P	V	.	S	D	A	S	V	S	A	L	K	K	Y	L	S	I	F	S	D	G	D	S	V	A	A	A	Q
Query Conservation																	.	.	.	.	.	.																																		.
Alig confidence																	.	.	.	.	.	.																																		.
Template Conservation
Template Sequence		V	W	N	Q	R	H	F	V	I	S	N	T	T	G	Y	S	D	R	A	V	L	E	R	E	V	Q	Y	T	L	E	M	I	K	L	V	P	H	N	E	S	A	W	N	Y	L	K	G	I	L	Q	D	R	G	L	S	R	Y	P	N	L	L	N	Q	L	L	D	L	Q	P	S	H	S	S	P	Y	L	I	A	F	L
Template Known Secondary structure												T	T	T		S		S																			S														T	T	T		G	G	G										T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		S	Q	L	A	E	Q	Q	K	Q	L	A	D	P	A	F	R	A	R	A	Q	G	L	A	A	V	D	S	G	M	A	G	K	A	I	P	E	L	Q	Q	.	A	V	R	A	N	P	K	D	S	E	A	L	G	A	L	G	Q	A	Y	S	Q	K
Query Conservation																																									.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	I	Y	E	D	M	.	.	.	.	.	.	.	.	.	.	.	L	E	N	Q	C	D	N	K	E	D	I	L	N	K	A	L	E	L	C	E	I	L	A	K	E	K	D	T	I	R	K	E	Y	W	R	Y	I	G	R	S	L	Q	S	K
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.			T	T		T	T																		T	T	S	G	G	G													T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.												.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions