Job Description P24554 Confidence 100.00% Date Thu Jan 5 11:41:40 GMT 2012 Rank 1 Aligned Residues 349 % Identity 18% Template c3m6aC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain Resolution 3.40 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	V	P	G	S	A	I	L	I	G	G	N	P	G	A	G	K	S	T	L	L	L	Q	T	L	C	K	L	A	Q	Q	M	K	T	L	Y	V	T	G	E	E	S	L	Q	Q	V	A	M	R	A	H	R	L	G	L	P	T	D	N	L	N	M	L	S	E	T	S	I	E	Q	I	C	L	I	A	E	E	E	Q
Query Conservation
Alig confidence																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence		K	S	L	K	G	P	I	L	C	L	A	G	P	P	G	V	G	K	T	S	L	A	K	S	I	A	K	S	L	G	R	K	F	V	R	I	S	L	G	G	R	.	.	.	.	.	.	I	I	Q	G	M	K	K	A	G	K	L	N	P	V	F	L	L	D	E	.	.	.	.	.	.	.	.	.	I	D	K	M	S
Template Known Secondary structure		S	S			S							S	S	S	S	S	S													T												.	.	.	.	.	.							T	T		S	S	S								.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.							.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.										.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.																											.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	L	M	V	I	D	S	I	Q	V	M	.	H	M	A	D	V	Q	S	S	P	G	S	V	A	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	T	A	A	Y	L	T	R	F	A	K	T	R	G	V	A	I	V	M	V	G	H	V	T	K
Query Conservation														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	M	L	E	V	L	D	P	E	Q	N	S	S	F	S	D	H	Y	I	E	E	T	F	D	L	S	K	V	L	F	I	A	T	A	N	N	L	A	T	I	P	G	P	L	R	D	R	M	E	I	I	N	I	A	G	Y	T	E	I	E	K	L	E	I	V	K	D	H	L	L	P	K	Q	I	K	E	H	G	L	K
Template Known Secondary structure				G	G	G	T		T	T	T	T	T	B				S	S	S					B		S	S								S	S	T	T	T	S																												T									T
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		224	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																															.	.																																	.
Query SS confidence							.																															.	.																																	.
Query Sequence		D	G	S	L	A	.	G	P	K	V	L	E	H	C	I	D	C	S	V	L	L	D	G	D	A	D	S	R	F	R	T	L	R	S	H	K	.	.	N	R	F	G	A	V	N	E	L	G	V	F	A	M	T	E	Q	G	L	R	E	V	S	N	P	S	A	I	F	L	S	R	.	G	D	E	V	T	S	G	S	S
Query Conservation							.																															.	.																																	.
Alig confidence							.																															.	.																																	.
Template Conservation
Template Sequence		K	S	N	L	Q	L	R	D	Q	A	I	L	D	I	I	R	Y	Y	T	R	E	A	G	V	R	S	L	E	R	Q	L	A	A	I	C	R	K	A	A	K	A	I	V	A	E	E	R	K	R	I	T	V	T	E	K	N	L	Q	D	F	I	G	K	R	I	F	R	Y	G	Q	A	E	T	E	D	Q	V	G	V	V
Template Known Secondary structure		G	G	G																			S	S	S																				T	T			S						T	T	T	T						S			S			S	T	T	S				B	S	S
Template Predicted Secondary structure
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.									.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.
Predicted Secondary structure																																				.	.																				.	.	.	.	.	.	.	.												.
Query SS confidence																																				.	.																				.	.	.	.	.	.	.	.												.
Query Sequence		V	M	V	V	W	E	G	T	R	P	L	L	V	E	I	Q	A	L	V	D	H	S	M	M	A	N	P	R	R	V	A	V	G	L	.	.	E	Q	N	R	L	A	I	L	L	A	V	L	H	R	H	G	G	L	Q	.	.	.	.	.	.	.	.	M	A	D	Q	D	V	F	V	N	V	V	.	G	G	V	K	V
Query Conservation																																				.	.																				.	.	.	.	.	.	.	.												.
Alig confidence																							.	.	.											.	.																				.	.	.	.	.	.	.	.												.
Template Conservation																							.	.	.
Template Sequence		T	G	L	A	Y	T	T	V	G	G	D	T	L	S	I	E	V	S	L	S	P	.	.	.	G	K	G	K	L	I	L	T	G	K	L	G	D	V	M	R	E	S	A	Q	A	A	F	S	Y	V	R	S	K	T	E	E	L	G	I	E	P	D	F	H	E	K	Y	D	I	H	I	H	V	P	E	G	A	V	P	K
Template Known Secondary structure								T	T													S	.	.	.	S		S							S																	T	S	S		G	G	G	S	S		S	S		T	T	T									T	T	S		G	G
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.				.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.							.	.	.	.	.	.	440	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.
Query Sequence		T	E	T	S	A	D	L	A	L	L	L	A	M	V	S	S	L	R	D	R	P	L	P	Q	D	L	V	V	F	G	E	V	G	L	A	G	E	I	R	P	V	P	S	G	Q	E	R	I	S	E	A	A	K	H	G	F	R	R	A	I	V	P	A	A	N	.	.	.	.	.	.	V	P	K	K	A	P	E	G	M
Query Conservation																																																																			.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	P	A	A	G	I	T	M	A	T	A	L	V	S	A	L	T	G	R	A	V	S	R	E	V	G	M	T	G	E	I	T	L	R	G	R	V	L	P	I	G	G	L	K	E	K	A	L	G	A	H	R	A	G	L	T	T	I	I	A	P	K	D	N	E	K	D	I	E	D	I	P	E	S	V	R	E	G	L
Template Known Secondary structure		G	G	G	G	G													S	S			B		T	T									T	T		B					S												T	T		S	B					G	G	G	G	G	G	T	T	T	S						T	S
Template Predicted Secondary structure
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	F	G	V	K	K	L	S	D	A	L	S	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	I	L	A	S	H	L	D	E	V	L	E	H	A
Template Known Secondary structure		B					S	B
Template Predicted Secondary structure
Template SS confidence
		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions