Job Description P24554 Confidence 98.07% Date Thu Jan 5 11:41:40 GMT 2012 Rank 60 Aligned Residues 123 % Identity 20% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	V	L	G	G	G	V	V	P	G	S	A	I	L	I	G	G	N	P	G	A	G	K	S	T	L	L	L	Q	T	L	C	K	L	A	Q	Q	M	K	T	L	Y	V	T	G	E	E	S	L	Q	Q	V	A	M	R	A	H	R	L	G	L	P	T	D	N	L	N	M	L	S	E	T	S	I	E	Q	I	C	L
Query Conservation
Alig confidence																																					.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	N	S	T	F	F	S	V	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A
Template Known Secondary structure		G	G	G			T	T												S	T	T	S												T	T	.	.	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	S	S	S	S		T	T	T
Template Predicted Secondary structure																																					.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.															200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	E	E	Q	P	K	L	M	V	I	D	S	I	Q	V	M	H	M	A	D	V	Q	S	S	P	G	S	V	A	Q	V	R	E	T	A	A	Y	L	T	R	F	A	K	T	R	G	V	A	I	V	M	V	G	H	V	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	V	G	N	D	S	Q	G	V	L	V	L	G	A	T	N	I
Template Known Secondary structure					T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	T	T	T	T	S		S								S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions