 |
Job Description | P24554 | Confidence | 97.12% | Date | Thu Jan 5 11:41:40 GMT 2012 |
Rank | 187 | Aligned Residues | 87 |
% Identity | 17% | Template | c2eyuA_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:twitching motility protein pilt; |
PDBTitle: the crystal structure of the c-terminal domain of aquifex2 aeolicus pilt
|
Resolution | 1.87 Å |
|
 |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | |
|
|
|
|
|
. |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
Query Sequence |   |
K | E | F | D | R | V | L | G | G | G | V | V | P | G | S | A | I | L | I | G | G | N | P | G | A | G | K | S | T | L | L | L | Q | T | L | C | K | L | A | Q | Q | M | K | T | L | Y | V | T | G | E | E | S | L | Q | Q | V | A | M | R | A | H | R | L | G | L | P | T | D | N | L | N | M | L | . |
. |
. |
. |
. |
. |
S |
Query Conservation |   |
  |
|
|
|   |   |
|
|
|
|
|   |   |
|   |
|
|
|
|   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|   |   |
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|   |   |   |   |   |
|   |
|   | . | . | . | . | . | . |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   | . | . | . |   |   |
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
| . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
D | K | V | L | E | L | C | H | R | . |
. |
. |
K | X | G | L | I | L | V | T | G | P | T | G | S | G | K | S | T | T | I | A | S | X | I | D | Y | I | N | Q | T | K | S | Y | H | I | I | T | I | E | D | P | I | E | . |
. |
. |
. |
. |
. |
. |
. |
Y | V | F | K | H | K | K | S | I | V | N | Q | R | E | V | G | E | D |
Template Known Secondary structure |   |
T |  |  |  |  | G | G | G |
| . | . | . | S | S |  |  |  |  |  |  |
| S | T | T |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | S | S |
|
| . | . | . | . | . | . | . | . | S |
|
|
|
| S | S | S |  |  |  |  |  |  | B | T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | |
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . |
  |
  |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | T | S | I | E | Q | I | C | L | I | A | E | E | E | Q | P | K | L | M | V | I | D | S | I |
Query Conservation |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |
|   |
|
|
|
|
Template Sequence |   |
T | K | S | F | A | D | A | L | R | A | A | L | R | E | D | P | D | V | I | F | V | G | E | X |
Template Known Secondary structure |   |
B | S |
|  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  | S |
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|