Job Description P24554 Confidence 97.59% Date Thu Jan 5 11:41:40 GMT 2012 Rank 140 Aligned Residues 97 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		82	.	.	.	.	.	.	.	90	.	.	.								.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																												.												.	.	.	.
Query SS confidence														.	.	.	.	.	.	.																												.												.	.	.	.
Query Sequence		K	E	F	D	R	V	L	G	G	G	V	V	.	.	.	.	.	.	.	P	G	S	A	I	L	I	G	G	N	P	G	A	G	K	S	T	L	L	L	Q	T	L	C	K	L	A	.	Q	Q	M	K	T	L	Y	V	T	G	E	.	.	.	.	E	S	L	Q	Q	V	A	M	R	A	H	R	L	G	L	P	T	D
Query Conservation														.	.	.	.	.	.	.																												.												.	.	.	.
Alig confidence														.	.	.	.	.	.	.																												.												.	.	.	.
Template Conservation
Template Sequence		D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y
Template Known Secondary structure								T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		N	L	N	M	L	S	E	T	S	.	.	I	E	Q	I	C	L	I	A	E	E	E	Q	P	K	L	M	V	I	D	S
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T
Template Known Secondary structure				S	S				T	T													T	T		S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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