Job Description P25745 Confidence 99.93% Date Thu Jan 5 11:42:33 GMT 2012 Rank 4 Aligned Residues 167 % Identity 25% Template c3q4gA_ PDB info PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.												.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	K	K	V	I	V	G	M	S	G	G	V	D	S	S	V	S	A	W	L	L	Q	Q	Q	.	.	.	.	.	.	.	.	.	.	.	G	Y	Q	V	E	G	L	F	M	K	N	W	E	E	D	D	G	E	E	Y	C	T	A	A	A	D	L	A	D	A	Q	A	V	C	D	K	L	G	I	E	L	H	T	V
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	K	S	L	V	L	G	I	S	G	G	V	D	S	T	T	C	G	R	L	A	Q	L	A	V	E	E	L	N	Q	Q	H	N	T	T	E	Y	Q	F	I	A	V	R	L	.	.	.	.	.	.	.	.	.	P	Y	G	E	Q	K	D	E	D	E	A	Q	L	A	L	S	F	I	R	P	T	H	S	V	S	V
Template Known Secondary structure		T										S	S																					T	T		S										.	.	.	.	.	.	.	.	.		S	S	S		S															S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80										.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		N	F	A	A	E	Y	W	D	N	V	F	E	L	F	L	A	E	Y	K	A	G	R	T	P	N	P	D	I	L	C	N	K	.	.	.	.	.	.	.	E	I	K	F	K	A	F	L	E	F	A	A	E	D	L	G	A	D	Y	I	A	T	G	H	Y	V	R	R	A	D	V	D	G	K	S	R	L	L	R	G	L
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	K	A	G	V	D	G	L	H	A	A	S	H	H	A	L	A	N	T	G	L	I	P	S	D	P	A	K	V	D	F	I	K	G	N	V	K	A	R	A	R	X	V	A	Q	Y	E	I	.	A	G	Y	V	G	G	L	V	L	G	T	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						T		S		S	S																								.					T				B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		D	S	N	K	D	Q	S	Y	F	L	Y	T	L	S	H	E	Q	I	A	Q	S	L	F	P	V	G	E	L	E	K	P	Q	V	R	K	I	A	E	D	L	G	L	V	.	.	T	A	K	K	K	D	S	T	G	I	C	F
Query Conservation																																													.	.
Alig confidence		.	.	.																																									.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	A	E	N	I	T	G	F	Y	T	K	F	G	D	G	A	C	D	L	A	P	L	F	G	L	N	K	R	Q	V	R	L	L	A	K	T	L	G	A	P	E	Q	L	V	Y	K	T	P	T	A	D	L	N	L
Template Known Secondary structure		.	.	.							T		S		T	T	T	T	T			S	B		T	T	T	T													T	T							T				S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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