 |
Job Description | P25745 | Confidence | 98.89% | Date | Thu Jan 5 11:42:33 GMT 2012 |
Rank | 47 | Aligned Residues | 115 |
% Identity | 18% | Template | c1ct9D_ |
PDB info |
PDB header:ligase | Chain: D: PDB Molecule:asparagine synthetase b; |
PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli
|
Resolution | 2.00 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | E | T | A | K | K | V | I | V | G | M | S | G | G | V | D | S | S | V | S | A | W | L | L | Q | Q | Q | G | Y | Q | V | E | G | L | F | M | K | N | W | E | E | D | D | G | E | E | Y | C | T | A | A | A | D | L | A | D | A | Q | A | V | C | D | K | L | G | I | E | L | H | T | V | N | F | A | A | E | Y | W | D | N |
Query Conservation |   |
  |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |
|
|
|
|   |   |
|
|
|   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | M | S | D | V | P | Y | G | V | L | L | S | G | G | L | D | S | S | I | I | S | A | I | T | K | K | Y | A | A | Q | L | H | S | F | A | V | G | L | P | G | S | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | L | K | A | A | Q | E | V | A | N | H | L | G | T | V | H | H | E | I | H | F | T | V | Q | E | G | L | D |
Template Known Secondary structure |   |
T |
|
| S | S |
|  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | S | T | T |
|  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
223 | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | F | E | L | F | L | A | E | Y | K | A | G | R | T | P | N | P | D | I | L | C | N | K | E | I | K | F | K | A | F | L | E | F | A | A | E | D | L | G | A | D | Y | I | A | T | G | H | Y | V | R |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |
|
|   |   |
|
|
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |   |
|   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |
|
|
|
Template Sequence |   |
A | I | R | D | V | I | Y | H | I | E | T | . |
. |
. |
. |
. |
Y | D | V | T | T | I | R | A | S | T | P | M | Y | L | M | S | R | K | I | K | A | M | G | I | K | M | V | L | S | G | E | G | S | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
| T | T |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
307 | . | . | 310 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|