Job Description Q46891 Confidence 99.97% Date Thu Jan 5 12:35:33 GMT 2012 Rank 33 Aligned Residues 236 % Identity 19% Template c3aamA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 Resolution 1.58 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40											.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	F	A	A	N	L	S	M	M	F	T	E	V	P	F	I	E	R	F	A	A	A	R	K	A	G	F	D	A	V	E	F	L	F	P	Y	N	Y	.	.	.	.	.	.	.	.	.	.	S	T	L	Q	I	Q	K	Q	L	E	Q	N	H	L	T	L	A	L	F	N	T	A	P	G	D	I	N	A	G	E	W
Query Conservation																																									.	.	.	.	.	.	.	.	.	.
Alig confidence										.																															.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation										.																																																																	.	.	.	.	.	.
Template Sequence		P	R	Y	G	F	H	L	S	.	I	A	G	K	K	G	V	A	G	A	V	E	E	A	T	A	L	G	L	T	A	F	Q	I	F	A	K	S	P	R	S	W	R	P	R	A	L	S	P	A	E	V	E	A	F	R	A	L	R	E	A	S	G	G	L	P	A	V	I	H	A	S	Y	L	.	.	.	.	.	.	V
Template Known Secondary structure							B			.			S	T	T													T		S						S	S		T	T			S																			T	T										T	T	.	.	.	.	.	.
Template Predicted Secondary structure										.																																																																	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.							.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	A	L	P	G	R	E	H	E	A	H	A	D	I	D	L	A	L	E	Y	A	L	A	L	N	C	E	Q	V	H	V	M	A	G	V	V	P	A	G	E	D	A	E	R	Y	R	A	V	F	I	D	N	I	R	Y	A	A	D	R	F	A	P	H	G	K	R	I	L	V	E	A	L	S	P	G	V	K	P
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.																																.	.
Template Conservation																																										.	.	.	.	.	.	.																																.	.
Template Sequence		N	L	G	A	E	G	E	L	W	E	K	S	V	A	S	L	A	D	D	L	E	K	A	A	L	L	G	V	E	Y	V	V	V	H	P	G	S	G	R	P	.	.	.	.	.	.	.	E	R	V	K	E	G	A	L	K	A	L	R	L	A	G	V	R	S	R	P	V	L	L	V	E	N	T	A	G	G	G	.	.
Template Known Secondary structure			T	T		S	S	T																				T										B	S			.	.	.	.	.	.	.															T			S	S	S											T	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																																.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.										.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		H	Y	L	F	S	S	Q	Y	Q	A	L	A	I	V	E	E	V	A	R	D	N	V	F	I	Q	L	D	T	F	H	A	Q	K	V	D	G	N	L	T	H	L	I	R	D	Y	A	.	.	.	.	.	.	.	.	.	G	K	Y	A	H	V	Q	I	A	G	L	P	D	.	.	.	.	.	.	.	.	R	H	E	P
Query Conservation																																																.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																												.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	E	K	V	G	A	R	F	E	E	L	A	W	L	V	A	D	T	P	L	Q	V	C	L	D	T	C	H	A	Y	A	A	G	Y	D	V	A	E	D	P	L	G	V	L	D	A	L	D	R	A	V	G	L	E	R	V	P	V	V	H	L	N	D	S	V	G	G	L	G	S	R	V	D	H	H	A	H	L
Template Known Secondary structure		.	.	.	T	B	S			S									T	T	S	S														T			T	T	T													T		G	G	G										S	S		T	T									T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																							.							.
Query SS confidence																							.							.
Query Sequence		D	D	G	E	I	N	Y	P	W	L	F	R	L	F	D	E	V	G	Y	Q	G	.	W	I	G	C	E	Y	.	K	P	R	G	L	T	E	E	G	L	G	W	F	D	A	W
Query Conservation																							.							.
Alig confidence										.													.							.
Template Conservation										.
Template Sequence		L	Q	G	K	I	G	E	G	.	L	K	R	V	F	L	D	P	R	L	K	D	R	V	F	I	L	E	T	P	R	G	P	E	E	D	A	W	N	L	R	V	F	R	A	W
Template Known Secondary structure		T	S	S	S	S	T	T		.						T		G	G	G	T	T	S						S			S
Template Predicted Secondary structure										.
Template SS confidence
		223	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions