Job Description Q46891 Confidence 96.30% Date Thu Jan 5 12:35:33 GMT 2012 Rank 52 Aligned Residues 201 % Identity 13% Template c2zyfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:homocitrate synthase; PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.								.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.													.	.	.															.
Query SS confidence													.	.	.	.	.	.	.													.	.	.															.
Query Sequence		M	P	R	F	A	A	N	L	S	M	M	.	.	.	.	.	.	.	F	T	E	V	P	F	I	E	R	F	A	A	.	.	.	A	R	K	A	G	F	D	A	V	E	F	L	F	P	.	Y	N	Y	S	T	L	Q	I	Q	K	Q	L	E	Q	N	H	L	T	L	A	L	F	N	T	A	P	G	D	I	N	A	G
Query Conservation													.	.	.	.	.	.	.													.	.	.															.
Alig confidence													.	.	.	.	.	.	.													.	.	.															.																													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		M	R	E	W	K	I	I	D	S	T	L	R	E	G	E	Q	F	E	K	A	N	F	S	T	Q	D	K	V	E	I	A	K	A	L	D	E	F	G	I	E	Y	I	E	V	T	T	P	V	A	S	P	Q	S	R	K	D	A	E	V	L	A	S	L	G	L	K	A	K	V	V	T	H	I	Q	C	R	.	.	.	.
Template Known Secondary structure													T	G	G	G	G	S	T	T																			T		S							G	G	G														S			S	S								S		.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	G	L	S	A	L	P	G	R	E	H	E	A	H	A	D	I	D	L	A	L	E	Y	A	L	A	L	N	C	E	Q	V	H	V	M	A	G	V	V	P	A	G	E	D	A	E	R	Y	R	A	V	F	I	D	N	I	R	Y	A	A	D	R	F	A	P	H	G	K	R	I	L	V	E	A	L	S	P	G	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	A	K	V	A	V	E	T	G	V	Q	G	I	D	L	L	F	G	T	S	K	G	R	.	.	.	.	.	D	I	P	R	I	I	E	E	A	K	E	V	I	A	Y	I	R	E	A	A	P	H	V	E	V	R	F	S	A	E	D	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T		S								S					.	.	.	.	.																					T	T	S							S	S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
																				77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	H	Y	L	F	S	S	Q	Y	Q	A	L	A	I	V	E	E	V	A	R	D	N	V	F	I	Q	L	D	T	F	H	A	Q	K	V	D	G	N	L	T	H	L	I	R	D	Y	A	G	K	Y	.	.	.	.	.	A	H	V	Q	I	A	G	L	P	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																																														.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.
Template Sequence		F	R	.	.	.	.	S	E	E	Q	D	L	L	A	V	Y	E	A	V	A	P	Y	V	D	R	V	G	L	A	D	T	V	G	V	A	T	P	R	Q	V	Y	A	L	V	R	E	V	R	R	V	V	G	P	R	V	D	I	E	F	H	G	H	N	D	T	G	C	A	I	A	N	A	Y	E	A	I	E	A	G	A
Template Known Secondary structure		T	T	.	.	.	.	S													G	G	G		S							T	T	S																			T	T	T	S							B		T	T	S												T	T
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
									212	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.	.	.						.	.
Query SS confidence		.	.	.	.	.	.	.						.	.
Query Sequence		.	.	.	.	.	.	.	H	E	P	D	D	.	.	G	E	I	N	Y	P	W	L	F	R	L	F	D	E	V	G
Query Conservation		.	.	.	.	.	.	.						.	.
Alig confidence		.	.	.	.	.	.	.						.	.
Template Conservation
Template Sequence		T	H	V	D	T	T	I	L	G	I	G	E	R	N	G	I	T	P	L	G	G	F	L	A	R	M	Y	T	L	Q
Template Known Secondary structure							B	G	G	G		S	S	T	T		B		B
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions