Job Description Q46891 Confidence 95.89% Date Thu Jan 5 12:35:33 GMT 2012 Rank 55 Aligned Residues 190 % Identity 8% Template c1ydoC_ PDB info PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. Resolution 2.71 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		E	R	F	A	A	A	R	K	A	G	F	D	A	V	E	F	L	.	.	.	.	.	.	.	F	P	Y	N	Y	S	T	L	Q	I	Q	K	Q	L	E	Q	N	H	L	T	L	A	L	F	N	T	A	P	G	D	I	N	A	G	E	W	G	L	S	A	L	P	G	R	E	H	E	A	H	A	D	I	D	L	A	L
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	I	N	Q	L	S	R	T	G	L	S	Y	I	E	I	T	S	F	V	H	P	K	W	I	P	A	L	R	D	A	I	D	V	A	K	G	I	D	R	E	K	G	V	T	Y	A	A	L	V	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	G	L
Template Known Secondary structure									T	T	T		S								S		T	T	T		G	G	G	T	T								S				T	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.																									.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																																										.
Query SS confidence																						.	.																																																										.
Query Sequence		E	Y	A	L	A	L	N	C	E	Q	V	H	V	M	A	G	V	V	P	A	.	.	G	E	D	A	E	R	Y	R	A	V	F	I	D	N	I	R	Y	A	A	D	R	F	A	P	H	G	K	R	I	L	V	E	A	L	S	P	G	V	K	P	H	Y	L	F	S	S	Q	Y	Q	A	L	A	I	V	E	E	V	.
Query Conservation																						.	.																																																										.
Alig confidence																						.	.																																																										.
Template Conservation
Template Sequence		E	N	A	L	E	G	G	I	N	E	A	C	V	F	X	S	A	S	E	T	H	N	R	K	N	I	N	K	S	T	S	E	S	L	H	I	L	K	Q	V	N	N	D	A	Q	K	A	N	L	T	T	R	A	Y	L	S	T	V	F	G	C	P	Y	E	K	D	V	P	I	E	Q	V	I	R	L	S	E	A	L	F
Template Known Secondary structure								T		S								S	S						T	T	T		S																			T	T										T	T		B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
				169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.																					.	.	.	.
Predicted Secondary structure		.	.																																		.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query SS confidence		.	.																																		.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Query Sequence		.	.	A	R	D	N	V	F	I	Q	L	D	T	F	H	A	Q	K	V	D	G	N	L	T	H	L	I	R	D	Y	A	G	K	Y	A	.	.	.	.	H	V	Q	I	A	G	L	P	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	P	D	.	.	.	.	.	.	.
Query Conservation		.	.																																		.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Alig confidence		.	.																.	.																	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		E	F	G	I	S	E	L	S	L	G	D	T	I	G	A	A	N	.	.	P	A	Q	V	E	T	V	L	E	A	L	L	A	R	F	P	A	N	Q	I	A	L	H	F	H	D	T	R	G	T	A	L	A	N	X	V	T	A	L	Q	X	G	I	T	V	F	D	G	S	A	G	G	L	G	G	C	P	Y	A	P	G
Template Known Secondary structure				T		S							S	S					.	.													T	T	S		G	G	G						B	G	G	G	S													T							B	G	G	G					T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
			216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	G	E	I	N	Y	P	W	L	F	R	L	F	D	E	V	G	Y	Q
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	S	G	N	A	A	T	E	D	I	V	Y	X	L	E	Q	X	D	I	K
Template Known Secondary structure					B		B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions