Job Description P0CE56 Confidence 3.33% Date Thu Jan 5 11:30:26 GMT 2012 Rank 100 Aligned Residues 75 % Identity 11% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.																										.	.
Query SS confidence																	.	.	.	.	.	.	.																										.	.
Query Sequence		L	P	W	Q	N	M	V	E	V	I	E	P	F	Y	P	.	.	.	.	.	.	.	K	A	G	N	G	R	R	P	Y	P	L	E	T	M	L	R	I	H	C	M	Q	H	W	Y	N	.	.	L	S	D	G	A	M	E	D	A	L	Y	E	I	A	S	M	R	L	F	A	R	L	S	L	D	S	A	L	P	D	R
Query Conservation																	.	.	.	.	.	.	.																										.	.
Alig confidence																	.	.	.	.	.	.	.																										.	.														.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.
Template Sequence		V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S	I	F	A	W	E	I	R	D	R	L	L	S	E	.	.	.	.	.	.	.	G	V	C	T	N	D	N	I	P	S	V
Template Known Secondary structure																		S			S					S					S	S	S																T	T													T	.	.	.	.	.	.	.	T	S	S		T	T	T
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	I	M	N	F	R	H	L	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	I	N	R	V	L	R	N	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions