Job Description P56258 Confidence 96.03% Date Thu Jan 5 12:06:20 GMT 2012 Rank 8 Aligned Residues 339 % Identity 10% Template c3oy2A_ PDB info PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Resolution 2.31 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		M	T	V	L	I	H	V	L	G	S	D	I	P	H	H	N	R	T	V	L	R	F	F	N	D	A	L	A	A	T	S	E	H	A	R	E	F	M	V	V	G	K	D	D	G	L	S	.	.	.	.	.	.	.	D	S	C	P	A	L	S	V	Q	F	F	P	G	K	K	S	L	A	E	A	V	I	A	K	A	K
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence																															.	.																	.	.	.	.	.	.	.
Template Conservation																															.	.
Template Sequence		M	K	L	I	I	V	G	A	H	S	S	V	P	S	G	Y	G	R	V	M	R	A	I	V	P	R	I	S	K	.	.	A	H	E	V	I	V	F	G	I	H	A	F	G	R	S	V	H	A	N	I	E	E	F	D	A	Q	T	A	E	H	V	R	G	L	N	E	Q	G	F	Y	Y	S	G	L	S	E	F	I	D
Template Known Secondary structure											T	T			S														T	T	.	.	T	S								S			S			S		S	S	S												T	T			S	T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	R	Q	Q	R	F	F	F	H	G	Q	F	N	P	T	L	W	L	A	L	L	S	G	G	I	K	P	S	Q	F	F	W	H	I	W	G	A	D	L	Y	E	L	S	S	G	L	R	Y	K	L	F	Y	P	L	R	R	L	A	Q	K	R	V	G	C	V	F	A	T	R	G	D	L	S	F	F	A	K	T	H
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		V	H	K	P	D	I	V	M	I	Y	N	D	P	I	V	I	G	N	Y	L	L	A	M	G	K	C	S	H	R	T	K	I	V	L	Y	V	D	L	V	S	K	N	I	R	E	N	.	.	.	.	.	.	.	L	W	W	I	F	S	H	P	K	V	V	G	V	M	A	M	S	K	C	W	I	S	D	I	C	N	Y
Template Known Secondary structure						S																		G	G	G			S												S	B	S			G	G	.	.	.	.	.	.	.	G	G	G	G	G	G		T	T							S	S	T									T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		154	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																						.	.	.
Query SS confidence										.	.	.																																						.	.	.
Query Sequence		P	K	V	R	G	E	L	L	.	.	.	F	F	P	T	R	M	D	P	S	L	N	T	M	A	N	D	R	Q	R	E	G	K	M	T	I	L	V	G	N	S	G	D	R	S	N	E	H	.	.	.	I	A	A	L	R	A	V	H	Q	Q	F	G	D	T	V	K	V	V	V	P	M	G	Y	P	P	N	N	E	A
Query Conservation										.	.	.																																						.	.	.
Alig confidence										.	.	.																																						.	.	.
Template Conservation
Template Sequence		G	C	K	V	P	I	N	I	V	S	H	F	V	D	T	K	T	I	Y	D	A	R	K	L	V	G	L	S	E	Y	N	D	D	V	L	F	L	N	M	N	R	N	T	A	R	K	R	L	D	I	Y	V	L	A	A	A	R	F	I	S	K	Y	P	D	A	K	V	R	F	L	C	N	S	H	H	E	S	K	F	D
Template Known Secondary structure		T			S															T	T					T	T		G	G	G	T	T	S							S		S	S	G	G	G	T																T	T											T	T		S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		228	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		Y	I	E	E	V	R	Q	A	G	L	E	L	.	.	.	.	.	.	F	S	E	E	N	L	Q	I	L	S	E	K	L	E	F	D	A	Y	L	A	L	L	R	Q	C	D	L	G	Y	F	I	F	A	R	Q	Q	G	I	G	T	L	C	L	L	I	Q	A	G	I	P	C	V	L	N	R	E	N	P	F	W	Q	D
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																																																							.
Template Conservation																																																																										.
Template Sequence		L	H	S	I	A	L	R	E	L	V	A	S	G	V	D	N	V	F	T	H	L	N	K	I	M	I	N	R	T	V	L	T	D	E	R	V	D	M	M	Y	N	A	C	D	V	I	V	N	C	S	S	G	E	G	F	G	L	C	S	A	E	G	A	V	L	G	K	P	L	I	I	S	.	A	V	G	G	A	D	D
Template Known Secondary structure														T		S							T	T						S															S							S			S	S									T	T	T							.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310
		302	.	.	.	.	.	.	.	310	.																														.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		M	T	E	Q	H	L	P	V	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	D	D	L	N	E	D	I	V	R	E	.	A	Q	R	Q	L	A	S	V	D	K	N	T	I	A	F	F	S	P	N	Y	L	Q	G	W	Q	R	A	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.												.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		Y	F	S	G	D	C	V	Y	K	I	K	P	S	A	W	I	S	V	D	D	R	D	G	I	G	G	I	E	G	I	I	D	V	D	D	L	V	E	A	F	T	F	F	K	D	E	K	N	R	K	E	Y	G	K	R	V	Q	D	F	V	K	T	K	.	.	.	P	T	W	D	D	I	S	S	D	I	I	D	F	F
Template Known Secondary structure			S		T	T	T	S												T	T	T		S	S																			T	T	S																T	T	S	.	.	.
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.	.	380	.	.	.	.	.	.	.
		352
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		388

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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