Job Description P56258 Confidence 91.92% Date Thu Jan 5 12:06:20 GMT 2012 Rank 17 Aligned Residues 335 % Identity 13% Template c3dzcA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Resolution 2.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.														.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																			.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	V	L	I	H	V	L	G	S	D	I	P	H	H	N	R	T	V	L	R	F	F	N	D	A	L	A	A	T	S	E	H	A	R	E	F	M	V	V	G	K	D	D	G	L	S	D	S	.	C	P	A	L	S	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	P	G	K	K	S	L	A	E
Query Conservation																																																			.								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.							.	.																															.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.							.	.
Template Sequence		M	K	K	V	L	I	V	F	G	T	.	R	P	E	A	I	K	.	.	M	A	P	L	V	Q	Q	L	C	Q	D	N	R	F	V	A	K	V	C	V	T	G	Q	H	R	E	M	L	D	Q	V	L	E	L	F	S	I	T	P	D	F	D	L	N	I	M	E	P	G	Q	T	L	N	G	V	T	S	K	I	L	L
Template Known Secondary structure											S	.							.	.												T	T										S	S	S										T	T				S								T	T
Template Predicted Secondary structure												.							.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	A	K	A	K	A	N	R	Q	Q	R	F	F	F	H	G	Q	F	N	P	T	L	W	L	A	L	L	S	G	G	I	K	P	S	Q	F	F	W	H	I	W	G	A	D	L	Y	E	L	S	S	G	L	R	Y	K	L	F	Y	P	L	R	R	L	A	Q	K	R	V	G	C	V	F	A	T	R	G	D	L
Query Conservation
Alig confidence																						.																																							.	.	.
Template Conservation																						.																																							.	.	.
Template Sequence		G	M	Q	Q	V	L	S	S	E	Q	P	D	V	V	L	V	H	G	D	T	.	A	T	T	F	A	A	S	L	A	A	Y	Y	Q	Q	I	P	V	G	H	V	E	A	G	L	R	T	G	N	I	Y	S	P	W	P	E	E	G	N	.	.	.	R	K	L	T	A	A	L	T	Q	Y	H	F	A	P	T	D	T	S
Template Known Secondary structure													S						T	T	S	.												T	T	T							T						S		T	T	S	S	T	T					.	.	.							T		S					S	S
Template Predicted Secondary structure																						.																																							.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	F	A	K	T	H	P	K	V	R	G	E	L	L	F	F	P	T	R	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	L	N	T	M	A	N	D	R	Q	R	E	G	K	M	T	I	L	V	G	N	S	G	D	R	S	N	E	H	I	A	A	L	R	A	V	H	Q	Q
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	N	L	L	Q	E	N	Y	N	A	E	N	I	F	V	T	G	N	T	V	I	D	A	L	L	A	V	R	E	K	I	H	T	D	M	D	L	Q	A	T	L	E	S	Q	F	P	M	L	D	A	S	K	K	L	I	L	V	T	G	H	R	R	E	S	F	G	G	G	F	E	R	I	C	Q	A	L	I	T	T
Template Known Secondary structure								T	T			G	G	G																																T		T	T			T	T	S								S		B				T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	D	T	V	K	V	V	V	P	M	G	Y	P	P	N	N	E	A	Y	I	E	E	V	R	Q	A	G	L	E	L	F	S	E	E	N	L	Q	I	L	S	E	K	L	E	F	D	A	Y	L	A	L	L	R	Q	C	D	L	G	Y	F	I	F	A	R	Q	Q	G	I	G	T	L	C	L	L	I	Q	A	G	I
Query Conservation
Alig confidence															.	.																								.	.	.																								.	.	.	.	.
Template Conservation															.	.																								.	.	.																								.	.	.	.	.
Template Sequence		A	E	Q	H	P	E	C	Q	I	L	Y	P	V	.	.	H	L	N	P	N	V	R	E	P	V	N	K	L	L	K	G	V	S	N	I	V	L	I	.	.	.	E	P	Q	Q	Y	L	P	F	V	Y	L	M	D	R	A	H	I	I	L	T	D	S	G	.	.	.	.	.	G	I	Q	E	E	A	P	S	L	G	K
Template Known Secondary structure						T	T								.	.		B												T	T	T		T	T					.	.	.																S					S		S	.	.	.	.	.	G	G	G	T	T	G	G	G	G	T
Template Predicted Secondary structure															.	.																								.	.	.																								.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.						.	.	.	.	.	.	.	300	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																.	.	.	.
Query SS confidence																																.	.	.	.
Query Sequence		P	C	V	L	N	R	E	N	P	F	W	Q	D	M	T	E	Q	H	L	P	V	L	F	T	T	D	D	L	N	E	.	.	.	.	D	I	V	R	E	A	Q	R	Q	L	A	S	V	D	K	N	T	I	A	F	F	S	P	N	Y	L	Q	G	W	Q	R	A	L	A
Query Conservation																																.	.	.	.
Alig confidence																																.	.	.	.
Template Conservation
Template Sequence		P	V	L	V	M	R	E	T	T	E	R	P	E	A	V	A	A	G	T	V	K	L	V	G	T	N	Q	Q	Q	I	C	D	A	L	S	L	L	L	T	D	P	Q	A	Y	Q	A	M	S	Q	A	H	N	P	Y	G	D	G	K	A	C	Q	R	I	A	D	I	L	A
Template Known Secondary structure								S	S		S								T	S					T	T																								T	S			T	T			S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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