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Job DescriptionP56258
Confidence87.46%DateThu Jan 5 12:06:20 GMT 2012
Rank18Aligned Residues216
% Identity12%Templatec2xcuC_
PDB info PDB header:transferaseChain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
Resolution2.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   127..130.........140.........150.........160.........170.........180.........190.........200......
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Query Sequence  PLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGELLFFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNEHIAALRAVH
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Template Sequence  LIEKILSKKFDLIIMRTQEDVEKFKTFGAKRVFS. . . . . . CGNLKFICQKGKGIKLKGEFIVAGSIHT. GEVEIILKAFK
Template Known Secondary structure  GGG
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   124.....130.........140.........150....... ..160.........170.........180..... ....190......
 
   207..210. ........220.........230........ .240.........250.........260.........270........ .
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Query Sequence  QQFGD. . TVKVVVPMGYPPNNEAYIEEVRQAGLE. . . . LFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQGIG. T
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Template Sequence  EIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRF. . . GILKELYPVGKIAIVGGTFVNIGGHN
Template Known Secondary structure  TT
TTSSGGGTT

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   197..200.........210.........220.........230.........240....... ..250.........260.........270...
 
   280.........290....... ..300.........310.........320.........330.........340 .........350..
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Query Sequence  LCLLIQAGIPCVLNRENP. . . . FWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKNTIAFFS. PNYLQGWQRALA
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Template Sequence  LLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLR
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   274.....280.........290.........300.........310.........320.........330.........340.........350.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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