Phyre 2 alignment of P00509 with c3ruyB

Job Description P00509
Confidence 99.91% Date Thu Jan 5 10:56:40 GMT 2012

Rank 147 Aligned Residues 335

% Identity 10% Template c3ruyB_

PDB info PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis

Resolution 2.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R
Query Conservation
Alig confidence																	.	.															.	.	.																												.	.	.	.	.	.
Template Conservation																	.	.															.	.	.																												.	.	.	.	.	.
Template Sequence	M	D	L	L	S	A	Y	S	A	V	N	Q	G	H	R	H	.	.	P	K	I	I	N	A	L	I	D	Q	A	N	R	V	.	.	.	T	L	T	S	R	A	F	H	S	D	Q	L	G	P	W	Y	E	K	V	A	K	L	T	N	K	E	M	.	.	.	.	.	.	V	L	P	M	N	T	G	A	E	A	V	E
Template Known Secondary structure			S	S					T		T	T		B	T		.	.											T	T	T		.	.	.	S				T	T	S			S	S													T		S		.	.	.	.	.	.					S	S
Template Predicted Secondary structure																	.	.															.	.	.																												.	.	.	.	.	.
Template SS confidence
	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.

	109	110	.	.	.	.	.	.								.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.					.																									.	.	.
Query SS confidence									.	.	.	.	.	.	.					.																									.	.	.
Query Sequence	V	A	A	D	F	L	A	K	.	.	.	.	.	.	.	N	T	S	V	.	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	.	.	.	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F
Query Conservation									.	.	.	.	.	.	.					.																									.	.	.
Alig confidence									.	.	.	.	.	.	.					.																									.	.	.
Template Conservation
Template Sequence	T	A	I	K	T	A	R	R	W	A	Y	D	V	K	K	V	E	A	N	R	A	E	I	I	V	C	E	D	N	F	H	G	R	T	M	G	A	V	S	M	S	S	N	E	E	Y	K	R	G	F	G	P	M	L	P	G	I	I	V	I	P	Y	G	D	L	E	A	L	K	A	A	I	T	P	N	T	A	A	F	I
Template Known Secondary structure													T	S				T	T								T	T					S	S					T	T		S		T	T	T	T	T	T			S			S	S						T	T											T	T
Template Predicted Secondary structure
Template SS confidence
	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

	178	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence	H	G	C	C	H	N	P	T	G	.	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G
Query Conservation										.
Alig confidence										.																																					.	.	.															.	.	.								.
Template Conservation																																															.	.	.															.	.	.								.
Template Sequence	L	E	P	I	Q	G	E	A	G	I	N	I	P	P	A	G	F	L	K	E	A	L	E	V	C	K	K	E	N	V	L	F	V	A	D	E	I	Q	T	G	L	G	R	T	G	K	.	.	.	V	F	A	C	D	W	D	N	V	T	P	D	M	Y	.	.	.	I	L	G	A	L	G	G	.	G	V	F	P	I	S
Template Known Secondary structure			S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	.	.	.	S	S	G	G	G	G	G	T				S			.	.	.					T	T	T	.	T	T	S
Template Predicted Secondary structure																																															.	.	.															.	.	.								.
Template SS confidence
	192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.		.	260	.	.	.	.

	257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Sequence	C	A	A	A	N	R	.	.	.	.	.	.	.	D	I	L	G	V	F	E	P	G	S	H	G	S	T	F	G	G	N	P	L	A	C	A	V	S	I	A	A	L	E	.	.	.	.	.	.	.	.	V	L	E	E	E	K	L	T	E	R	S	L	Q	L	G	E	K	L	V	G	Q	L	K	E	I	D	N	P	M
Template Known Secondary structure							.	.	.	.	.	.	.				T	T			T	T	S	S			S	S	T	T														.	.	.	.	.	.	.	.					T	T																	T	T				T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
	266	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.						.
Query SS confidence																																						.	.	.	.						.
Query Sequence	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	R	V	N	V	A	.	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation																																						.	.	.	.						.
Alig confidence																																						.	.	.	.						.
Template Conservation
Template Sequence	I	T	E	V	R	G	K	G	L	F	I	G	I	E	L	N	E	P	A	R	P	Y	C	E	Q	L	K	A	A	G	L	L	C	K	E	T	H	E	N	V	I	R	I	A	P	P	L	V	I	S	E	E	D	L	E	W	A	F	Q	K	I	K	A	V	L
Template Known Secondary structure								T	T							S	S		S											T							T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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