Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 10 Aligned Residues 385 % Identity 24% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10			.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure												.	.						.	.	.	.
Query SS confidence												.	.						.	.	.	.
Query Sequence		M	F	E	N	I	T	A	A	P	A	.	.	D	P	I	L	G	.	.	.	.	L	A	D	L	F	R	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F
Query Conservation												.	.						.	.	.	.
Alig confidence												.	.						.	.	.	.																																										.
Template Conservation																																																																.
Template Sequence		V	A	A	K	H	A	K	G	K	K	L	K	D	V	I	F	V	T	A	G	Q	A	Q	A	D	A	K	E	N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	.	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F
Template Known Secondary structure			S		T	T	T	T	T																							G	G	G						S	S			B		T	T	S		B												T		.							S				T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N
Query Conservation
Alig confidence																	.	.	.																							.	.																																		.
Template Conservation																	.	.	.																							.	.																																		.
Template Sequence		L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	.	.	.	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N	Y	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	.	F	D	E	H
Template Known Secondary structure											G	G	G			S	.	.	.	S								S														.	.	S		T	T							S	S			T									T	T								S	.	B		T	T
Template Predicted Secondary structure																	.	.	.																							.	.																																		.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																.	.	.																																			.	.	.	.	.	.
Query SS confidence																.	.	.																																			.	.	.	.	.	.
Query Sequence		H	T	L	D	F	D	A	L	I	N	S	L	N	E	.	.	.	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	.	.	.	.	.	.	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A
Query Conservation																.	.	.																																			.	.	.	.	.	.
Alig confidence																.	.	.																																			.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R
Template Known Secondary structure		S	S	B																	S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		E	G	L	R	A	F	A	A	M	H	K	E	.	.	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K
Template Known Secondary structure		G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.
Predicted Secondary structure																																																				.																				.	.	.
Query SS confidence																																																				.																				.	.	.
Query Sequence		R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	.	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	.	.	.	G	R	V	N	V	A	G
Query Conservation																																																				.																				.	.	.
Alig confidence																																.	.	.	.																	.																				.	.	.
Template Conservation																																.	.	.	.
Template Sequence		F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	.	.	.	.	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	L	A	N	G	I	R	I	A	A	C	G
Template Known Secondary structure																															T	.	.	.	.								S	S	S							T	T											T	T							S	S						G	G	G
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X
Template Known Secondary structure		S						T	T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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