Job Description P00509 Confidence 99.87% Date Thu Jan 5 10:56:40 GMT 2012 Rank 175 Aligned Residues 302 % Identity 17% Template c3ndnC_ PDB info PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate Resolution 1.85 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	.	.	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T
Query Conservation																																.	.
Alig confidence																																.	.																.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		T	S	G	Y	V	Y	G	S	A	A	V	A	E	K	S	F	A	G	E	L	D	H	Y	V	Y	S	R	Y	G	N	P	T	V	S	V	F	E	E	R	L	R	L	I	E	G	A	P	.	.	.	.	.	.	.	.	.	.	A	A	F	A	T	A	S	G	M	A	A	V	F	T	S	L	G	.	.	A	L	L	G
Template Known Secondary structure			S	B				S	S									T	T	S	S					B	T	T	T																	T		S	.	.	.	.	.	.	.	.	.	.						S	S											.	.	T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110
		119	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		S	V	K	R	V	W	V	S	N	P	S	W	P	N	.	.	.	.	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																			.	.	.	.	.	.	.										.	.	.																						.	.	.
Template Conservation																																						.	.	.	.	.	.	.										.	.	.																						.	.	.
Template Sequence		A	G	D	R	L	V	A	A	R	S	L	F	G	S	C	F	V	V	C	S	E	I	L	P	R	W	G	V	Q	T	V	F	V	D	G	D	.	.	.	.	.	.	.	D	L	S	Q	W	E	R	A	L	.	.	.	S	V	P	T	Q	A	V	F	F	E	T	P	S	N	P	M	Q	S	L	V	D	.	.	.	I
Template Known Secondary structure		T	T							S	S											T					T	T								T	T	.	.	.	.	.	.	.									T	.	.	.	T	S			S						S	S		T	T	T						.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.										.	.	.																						.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		A	A	V	T	E	L	A	H	A	A	G	A	K	V	V	L	D	N	V	F	A	.	.	.	.	.	.	.	.	.	.	T	P	L	L	Q	Q	G	F	P	L	G	V	D	V	V	V	Y	S	G	T	H	I	D	G	Q	G	R	V	L	G	G	A	I	L	G	D	R	E	.	.	.	.	.	.	Y	I	D	G	P
Template Known Secondary structure											T	T								T	T	T	.	.	.	.	.	.	.	.	.	.								G	G	G	T		S										S		S	S													.	.	.	.	.	.				T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.							.	.	.	240	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Q	K	L	M	R	H	T	G	P	A	M	S	A	F	N	A	W	V	L	L	K	G	L	.	.	.	.	.	.	.	.	.	.	E	T	L	A	I	R	V	Q	H	S	N	A	S	A	Q	R	I	A	E	F	L	N	G	H	P	S	V	R	W	V	R	Y	P	Y	L	P	S	H	P	Q	Y	D	L	A	K	R
Template Known Secondary structure																										.	.	.	.	.	.	.	.	.	.																							T		T	T							T	T	S	T	T	S	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.											.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
			341	.	.	.	.	.	.	.	.	350	.						.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.																																.	.	.	.	.	.	.	380
Predicted Secondary structure		.												.	.	.	.	.														.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.												.	.	.	.	.														.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	I	I	K	Q	N	G	M	F	S	F	S	.	.	.	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	.	.	.	F	G	V	Y	A	V	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	N	V	A	G	M
Query Conservation		.												.	.	.	.	.														.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.												.	.	.	.	.														.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																																																																.
Template Sequence		Q	M	S	G	G	G	T	V	V	T	F	A	L	D	C	P	E	D	V	A	K	Q	R	A	F	E	V	L	D	K	M	R	L	I	D	I	S	N	N	L	G	D	A	K	S	L	V	T	H	P	A	T	T	T	H	R	A	M	G	P	E	G	R	A	A	I	G	L	G	D	G	V	V	R	I	S	V	G	.	L
Template Known Secondary structure				S	S			S							S	S		G	G	G													S	S	S				S			S		S	S						G	G	G	T	T	T	S	T	T							T	T	T			T	T								.	S
Template Predicted Secondary structure																																																																																.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	E	D	T	D	D	L	I	A	D	I	D	R	A	L
Template Known Secondary structure		.	.	S
Template Predicted Secondary structure		.	.
Template SS confidence
				392	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions