Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 31 Aligned Residues 361 % Identity 17% Template c3jtxB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution Resolution 1.91 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	E	N	I	T	A	A	P	A	D	P	I	L	G	L	A	D	L	F	R	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E
Query Conservation
Alig confidence																																				.	.	.	.	.																				.	.
Template Conservation																																				.	.	.	.	.																				.	.
Template Sequence		L	L	K	Q	L	K	P	Y	P	F	A	R	L	H	E	A	X	Q	G	I	S	A	P	E	G	X	E	A	V	P	L	H	I	G	.	.	.	.	.	E	P	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	.	.	E	L	E	K	Y	P	L	T	A	G	L	P	E	L	R	Q	A	C	A	N
Template Known Secondary structure				T	T														T	T					T	T						T	T			.	.	.	.	.	S			S													T	G	G	.	.	G	G	G	S				T	T
Template Predicted Secondary structure																																				.	.	.	.	.																				.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure								.																																	.	.	.
Query SS confidence								.																																	.	.	.
Query Sequence		L	L	F	G	K	G	.	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	.	.	.	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T
Query Conservation								.																																	.	.	.
Alig confidence								.										.																			.	.			.	.	.																																.
Template Conservation																		.																			.	.																																					.
Template Sequence		W	L	K	R	R	Y	D	G	L	T	V	D	A	D	N	E	.	I	L	P	V	L	G	S	R	E	A	L	F	S	F	V	Q	T	V	.	.	L	N	P	V	G	I	K	P	A	I	V	S	P	N	P	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	.	P	A	P	S	F	N
Template Known Secondary structure							T	T	T					T	T	T	S	.					S	S													.	.															S												T	T									.		T	T	T
Template Predicted Secondary structure																		.																			.	.																																					.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	.	.	.	F	A	A
Query Conservation																																																																												.	.	.
Alig confidence												.	.	.																																																														.	.	.
Template Conservation												.	.	.
Template Sequence		P	D	W	R	S	I	S	E	E	V	.	.	.	W	K	R	T	K	L	V	F	V	C	S	P	N	N	P	S	G	S	V	L	D	L	D	G	W	K	E	V	F	D	L	Q	D	K	Y	G	F	I	I	A	S	D	E	C	Y	S	E	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G	R
Template Known Secondary structure				G	G	G	S					.	.	.		T	T								S	S		T	T	T																												T	T	T	T			S	T	T													T	T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D
Query Conservation
Alig confidence															.																													.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation															.																													.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		S	R	Q	K	L	L	X	F	T	S	L	S	R	.	S	N	V	P	G	L	R	S	G	F	V	A	G	D	A	E	L	L	K	N	F	L	L	Y	R	T	Y	H	.	.	.	.	.	.	.	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	D	.	.	.	.	.	.	.	E	Q	H	V	I	D
Template Known Secondary structure				T	T										.		S		G	G	G																							.	.	.	.	.	.	.	T																		.	.	.	.	.	.	.
Template Predicted Secondary structure															.																													.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290								.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.					.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																												.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	.	.	.	.	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.																		.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		N	R	R	L	Y	Q	E	K	F	E	R	V	I	P	I	L	Q	Q	V	F	.	.	.	.	.	D	V	K	L	P	D	A	S	F	Y	I	W	L	K	V	P	D	G	D	D	L	A	F	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	G	E	G	Y	V
Template Known Secondary structure																		T	T	T	S	.	.	.	.	.						S	S	S	S							T	T	S																				G	G	G	G	S			B	T	T	B		T	T	T	T
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		R	I	A	L	V	.	A	D	V	A	T	C	V	K	A	A	E	D	I	V	S	L	Y
Template Known Secondary structure							.	S
Template Predicted Secondary structure							.
Template SS confidence
		373	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions