Job Description P00509 Confidence 99.77% Date Thu Jan 5 10:56:40 GMT 2012 Rank 217 Aligned Residues 343 % Identity 11% Template c3hmuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L
Query Conservation
Alig confidence																			.	.																		.																												.	.	.	.
Template Conservation																			.	.																		.																												.	.	.	.
Template Sequence		I	L	D	A	M	A	G	L	W	C	V	N	I	G	Y	G	R	.	.	D	E	L	A	E	V	A	A	R	Q	M	R	E	L	P	Y	Y	.	N	T	F	F	K	T	T	H	V	P	A	I	A	L	A	Q	K	L	A	E	L	A	P	G	D	L	N	.	.	.	.	H	V	F	F	A	G	G	G	S	E	A	N
Template Known Secondary structure					T	T					T		T	T		B			.	.															S			.		S	S	S	S																	S		T	T			.	.	.	.						S	S
Template Predicted Secondary structure																			.	.																		.																												.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.							.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.													.	.	.	.	.	.											150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	A	A	D	F	L	A	K	N	T	.	.	.	.	.	.	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	V	R	E	Y	A	Y	.	.	.	.	.	.	.	.	.	.	Y	D	A	E	N	H	T	L	D	F
Query Conservation													.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	N	I	R	M	V	R	T	Y	W	Q	N	K	G	Q	P	E	K	T	V	I	I	S	R	K	N	A	Y	H	G	S	T	V	A	S	S	A	L	G	G	M	A	G	M	H	A	Q	S	G	L	I	P	D	V	H	H	I	N	Q	P	N	W	W	A	E	G	G	D	M	D	P	E	E	F	G	L	A	R	A
Template Known Secondary structure															T	T		T	T								T	T					S	S							S								T	T				S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure											.																					.
Query SS confidence											.																					.
Query Sequence		D	A	L	I	N	S	L	N	E	.	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	.	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E
Query Conservation											.																					.
Alig confidence											.																					.																																			.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		R	E	L	E	E	A	I	L	E	L	G	E	N	R	V	A	A	F	I	A	E	P	V	Q	G	A	G	G	V	I	V	A	P	D	S	Y	W	P	E	I	Q	R	I	C	D	K	Y	D	I	L	L	I	A	D	E	V	I	C	G	F	G	R	T	G	N	.	.	.	W	F	G	T	Q	T	M	G	I	R	P	H
Template Known Secondary structure													G	G	G								S	S	B	S	T	T	T		B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	.	.	.	S							T				S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R
Query Conservation
Alig confidence				.	.	.																													.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation				.	.	.																													.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Sequence		I	M	.	.	.	T	I	A	K	G	L	S	S	G	Y	A	P	I	G	G	S	I	V	C	D	E	V	A	H	V	I	G	K	.	.	.	.	.	D	E	F	N	H	G	Y	T	Y	S	G	H	P	V	A	A	A	V	A	L	E	N	L	R	.	.	.	.	.	.	.	.	I	L	E	E	E	N	I	L	D	H
Template Known Secondary structure				.	.	.				G	G	G	T	T	T	S	S																T	T	.	.	.	.	.	S							T	T	T	T														.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure				.	.	.																													.	.	.	.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		285	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.																	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.						.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.						.	.
Query Sequence		I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	R	V	N	V	A	.	.
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.						.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.						.	.
Template Conservation
Template Sequence		V	R	N	V	A	A	P	Y	L	K	E	K	W	E	A	L	T	D	H	P	L	V	G	E	A	K	I	V	G	M	M	A	S	I	A	L	T	P	N	K	A	S	R	A	K	F	A	S	E	P	G	T	I	G	Y	I	C	R	E	R	C	F	A	N	N	L	I	M	R	H	V	G	D	R	M	I	I	S	P	P
Template Known Secondary structure					T											G	G	G	G	S	T	T								T	T								S		G	G	G	T			B	S	S		T	T													T	T	B						T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
			379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		L	V	I	T	P	A	E	I	D	E	M	F	V	R	I	R	K	S	L
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions